CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTATAACTTTCTGTGATCAAGGAGAACAACAGATTAAAGAAA
AGATTGATGCTGAATGGAATACTGTGAAGAAACATCATGACCATGCAGCT
TTTTAAAGGAAAGCATTTCAGTGGGGCTTGCTTTCTGTTTCAGAGATTTA
GTCCACTGTCATCATGGTGGGAAGCTTGGTGGCACGTAGGCATACATGGT
AGTGGAGAAGTAGTTTGAGAGTTCTACATCTAGATTCATAGGCAGCAGAA
AGAGAGAGTTAGTGGACATGGCTTGGTCTACTGAAATTCAGTGACACAAG
TCCTCTAGCAGACATTTTTCCTAATCTCCNNTCAGCCCCGCTACTCCTTA
ATAACTGAACACTCAAATATCCCACCTTATGTAAGAAAATCCTATGCNTA
CCATCACAGTGACCATAGCAGGTACACAGATTCAGATTCCCCAACATAGT
ACATTTTAAGTACAATAGATCTTATTGGTTAAAGCAAGTCATAAATCAAA
GTGTTTACTAATACATTGATGAGGGCCATAGGCAGGTGGGTGACAGCACA
GCAGGGGATACTCTGCTATAAGCTTCTGACAATATCTGATGATATTATCA
TTTGAATTGGTAAAACCTACCGGTATCCTAAGAATACATCGCATGTACTT
TATAGCCATCACCACGCTAATATCCGCACCAATTTTCCTCATATATAGCT
G

CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAATGACAATAAGAAAGATT
GATTTTTCTCTCTTTTCCCCCCTCATGGTAGAGAGAGAAGCCTAACCCCT
GTGTCTCAGCAAATCCCTAACAAGGTGCTGCAGTCAGAGAAGTTTTTAAA
TTAACTCTAACTGGTGCAAAACAAAAGCAAGACCAAAACCAAAACCCATT
ATGTATGTTGATGTGTTCCACCTCAGGGTATGTATAATTGTGTTACATTT
AAATCAAGTTAAACGTATTTCTTCAAATTGTTATCGTTTTTATGATTTAA
AAAAAAACATTGTATTTCCTTTCTCTCCGCTTTTTTGACTGGGGTCATCC
CACCCCTAGAACGTACACCAACCTAACTATTTGCTACCCGTTCGTTGGTC
AGCTTTTCTTCTTCTTTTGCCAGCTGGTAACTGCTCCCTGGTAACTGCTC
CTGACATTCTGTGAGACACACAAGTTTTGTTGTTGTTGCTGTTGTTGTTG
TTGTTTTTCCCCTCTTCTTCTCTTTCTCCTTCCCCCCTATTCTATTTTCC
ACTCTCTATCTATCACATCCCCTCAATACTACATTTTATTAATTTCTTCC
ACCCTTTTTTTCTCTCCCCTCTTATTCTTCTTCTTTCTTTTTTTTTTTCA
TTCTTATATTATTATTATTGTTTTTTCCATATTTTCCCCTGCCCTTTTTT
TTT

Query= MSMg01no263_f15.g1 MSMg01no263_f15.g1 CHROMAT_FILE:
MSMg01no263_f15.g1 PHD_FILE: MSMg01no263_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:15 2005
         (457 letters)



>mm_chr4_12784508_12785366
          Length = 859

 Score =  683 bits (353), Expect = 0.0
 Identities = 434/463 (93%), Gaps = 10/463 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaatgacaataagaaagattgatttttctctcttttcccccctcatggtagagagaga 60
           |||||||||||||||||||| ||||||||||||||||  |||||| ||||||||||||| 
Sbjct: 659 tttaatgacaataagaaagactgatttttctctcttt--ccccct-atggtagagagagg 603

                                                                       
Query: 61  agcctaacccctgtgtctcagcaaatccctaacaaggtgctgcagtcagagaagttttta 120
           |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 602 agcctaacccctgtgtctcagcaaatccctgacaaggtgctgtagtcagagaagttttta 543

                                                                       
Query: 121 aattaactctaactggtgcaaaacaaaagcaagaccaaaaccaaaacccattatgtatgt 180
           ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 542 aattaactctaactgctgcaaaacaaaagcaagaccaaaaccaaaacccattctgtacgt 483

                                                                       
Query: 181 tgatgtgttccacctcagggtatgtataattgtgttacatttaaatcaagttaaacgtat 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 482 tgatgtgttccacctcagggtatgtataattgtcttacatttaaatcaagttaaacgtat 423

                                                                       
Query: 241 ttcttcaaattgttatcgtttttatgattt-aaaaaaaaacattgtatttcctttctctc 299
           |||||||||||||||||||||||||||||| |||||||||||||| |  |||||||| ||
Sbjct: 422 ttcttcaaattgttatcgtttttatgatttaaaaaaaaaacattgaaaatcctttct-tc 364

                                                                       
Query: 300 -cgcttttttgactggggtcatccc---acccctagaacgtacaccaacctaactatttg 355
             |||||||||||||||||||||||   |||||||||||||| |  ||||||||||||||
Sbjct: 363 atgcttttttgactggggtcatcccagaacccctagaacgtatattaacctaactatttg 304

                                                                       
Query: 356 ctacccgttcgttggtcagcttttcttcttcttttgccagctggtaactgctccctggta 415
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 303 ctacccgttcattggtcagcttttcttcctcttttgccagctggtaactgctccctggta 244

                                                      
Query: 416 actgctcctgacattctgtgagacacacaag-ttttgttgttg 457
           |||||||||||||||||||||||||| || | |||||||||||
Sbjct: 243 actgctcctgacattctgtgagacacgcatgtttttgttgttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 859
Length adjustment: 10
Effective length of query: 447
Effective length of database: 849
Effective search space:   379503
Effective search space used:   379503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)