BAC Information

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BAC

Clone NameMSMg01-263N11
Chromosome4 (Build37)
Map Location 123,556,566 - 123,700,690
singlet/doubletdoublet
Overlap geneMycbp, Rragc
Upstream geneMfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064
Downstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263N11.T7 (MSMg01no263_n11.b1)MSMg01-263N11.TJ (MSMg01no263_n11.g1)
ACCAG405553AG405554
length749750
length of high quality
(start - end)		331 (48 - 378)179 (75 - 253)
definitionCHROMAT_FILE: MSMg01no263_n11.b1 PHD_FILE: MSMg01no263_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:52 2005CHROMAT_FILE: MSMg01no263_n11.g1 PHD_FILE: MSMg01no263_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,700,377 - 123,700,690)(123,556,566 - 123,556,744)
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAATCTACCCCTACTCTGTGTATCAAAAACCACTGCACAGAGC
AAAGGTTCCTGACCCACTGAGCATGGACAAGGAGCCCATGTGCAAATGGT
ACCTGACCCTCTTCTATCTGTGTTTGGGAGGCAGAGCATCCCTCTTGCCT
ACCCACAAATAACAGCATATTAGGATTCTACACAAGTTTAAAAGGCAAAC
ATATGCTGTGGTTGCCTATCGTCTTAACCATCTTGACTCTCACATGAACT
CTAAGATGATCACAGGCCATGTTACACTCCATCTTAGCCAGGAAACTGAG
GCTCGCTGAAGGTATTTATTTTTCCCCCCGCCCGTCAGAGGTAGAGTTGA
GTTCTTTTTTTATTTTATTTCATTTTTATTGAATATTTTATTTATTTGCA
TTTCAAATGTTATTCCCTCTACTGGTTTCCCTCTCCGGAAACCCCCTATT
CCCCTGCTTCTATGAGGGTGCTAACCGACCCACCCACTCCTGCCTCCCTT
CCCTGGCATTCCCCTACACTGGGGCATGGAGCCTTCTCAGGGCCAAGGGC
CTCTCCTCCCATTGATGTCCGGCAAGGCCATCCTCTACTAAATAATGTGG
TTGGAGCCATGGGACCCTCCATGTGTACTCTTTGGTTGGTGGTTTAGTCC
CTGGTAGCTATGGAGGGATCTGGCTGGCTGATATTGTTGCTCTTTCTAN

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACTTGTTTAAACTGTTCATCAGAG
TCTCCATGGGCTGACTAGAGACTCAGGCCTGCCTGGCAACTCTAAGGCCT
TAGGAAATCAGGCTGACAATGTGGTGCTGTGAGATTCCAGACCAAGGGTT
CTGGCTGCTGAGAGTTGGTTACCTACCTACTTTATTTGGAGGAGGCCAGT
GCCTTTGGTGCCACCCCAGTACCCGGGGGATAAAAAGGGTACCCCTTTTG
GGGTGCTCCCCTTTTCGCGCTTTTGATTTTATCTCCCCCCCCCCCTTTTA
TTTATGAACTATTCCCCCTTTTCCGTCGCCGGGTTGTCTTTTTCTTTTTC
ACCCCCCCCCTTCCCTCTTTTCCCCTTTTTTTCCCTCTCTCCCCCCTCTT
TTCCAACCCCTTTCTTACTTCCCCCCCCCCCTACTTACTTTTCTCCTCAC
CTCCTCCTACCATTCCCCTCCCCCCCCTCTATTTCTTTTTTCTTTCCTCC
CCACCTTTCTTTACTATCCTCTTCTCCCCCCCCATATTTTTTTGCTTTTT
TTTTTTTTCTAATTCCCCCTCCTATTCTCTCCCTTTTATTTTATGTCGCN
GGCCTTTTCTCCTCCCTCTCTTATATTAGGAGGGGGAGGGCCCCCCCCCC
CCCCCCCCCCGTTTCTATTTTTTTTATCTACTTATTAACTAACTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_n11.b1 MSMg01no263_n11.b1 CHROMAT_FILE:
MSMg01no263_n11.b1 PHD_FILE: MSMg01no263_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:52 2005
         (331 letters)



>mm_chr4_123700174_123700904
          Length = 731

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctaatctacccctactctgtgtatcaaaaaccactgcacagagcaaaggttcct 63
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 517 ggaattctaatctacccctactctatgtatcaaaaaccactgcacagagcaaaggttcct 458

                                                                       
Query: 64  gacccactgagcatggacaaggagcccatgtgcaaatggtacctgaccctcttctatctg 123
           ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 457 gacccgctgagcatggacaacgagcccatgtgcaaacggtacctgaccctcttctatctg 398

                                                                       
Query: 124 tgtttgggaggcagagcatccctcttgcctacccacaaataacagcatattaggattcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgtttgggaggcagagcatccctcttgcctacccacaaataacagcatattaggattcta 338

                                                                       
Query: 184 cacaagtttaaaaggcaaacatatgctgtggttgcctatcgtcttaaccatcttgactct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cacaagtttaaaaggcaaacatatgctgtggttgcctatcgtcttaaccatcttgactct 278

                                                                       
Query: 244 cacatgaactctaagatgatcacaggccatgttacactccatcttagccaggaaactgag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cacatgaactctaagatgatcacaggccatgttacactccatcttagccaggaaactgag 218

                         
Query: 304 gctcgctgaaggta 317
           ||||||||||||||
Sbjct: 217 gctcgctgaaggta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no263_n11.g1 MSMg01no263_n11.g1 CHROMAT_FILE:
MSMg01no263_n11.g1 PHD_FILE: MSMg01no263_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:52 2005
         (179 letters)



>mm_chr4_123556366_123556944
          Length = 579

 Score =  331 bits (171), Expect = 2e-95
 Identities = 177/179 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacttgtttaaactgttcatcagagtctccatgggctgactagagactcaggcctgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tcacttgtttaaactgttcatcagagtctccatgggctgactagagagtcaggcctgcct 260

                                                                       
Query: 61  ggcaactctaaggccttaggaaatcaggctgacaatgtggtgctgtgagattccagacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaactctaaggccttaggaaatcaggctgacaatgtggtgctgtgagattccagacca 320

                                                                      
Query: 121 agggttctggctgctgagagttggttacctacctactttatttggaggaggccagtgcc 179
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggttctggctgccgagagttggttacctacctactttatttggaggaggccagtgcc 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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