BAC Information

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BAC

Clone NameMSMg01-263N18
Chromosome4 (Build37)
Map Location 127,235,883 - 127,236,373
singlet/doubletsinglet
Overlap genenone
Upstream geneClspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
Downstream geneLOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263N18.T7 (MSMg01no263_n18.b1)MSMg01-263N18.TJ (MSMg01no263_n18.g1)
ACCAG405566AG405567
length755758
length of high quality
(start - end)
315 (52 - 366)491 (74 - 564)
definitionCHROMAT_FILE: MSMg01no263_n18.b1 PHD_FILE: MSMg01no263_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:54 2005CHROMAT_FILE: MSMg01no263_n18.g1 PHD_FILE: MSMg01no263_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTATTTTATTCTGTATATGTTTCTGGGTGCATCTCTTTGT
AAAGGCTTTCCAGTTATTCTAGCTATGATATTACACATACATATTTGTTT
ACTTATTTATTTATTTGTTTATTTATTAGATCAGTATTTGTGTCATTCCT
TAACATTGGTCTACTAAAAAAATAAGTGTTTGGGGTTACCTTATTATTCC
TGGTGGCCGAAGAAGCCAGGTTTCCAAGCCAAGGCTTATTGACACCTGGG
GGTGACCATGTGCCTCCTTCCTACTGGGAAGGTTGGGAGTCCCGGTTCCT
CAATGACCCTCACTATTAGATCTACACTACGACAATTAAGAGGACATTGC
TCCTAAGTTATCTCCACCCCCCCTTCTGAGGAGACGGTAGTCTCCTTATT
TTTAGCCGTGCTAAAGTCCTGTCTCTAAGATGCCTCCTCTGATACCCTTC
CCCTAAATTAATGACGGTGCTGTATGGCTACTTCTTGTTCTACCCTTCTG
CCCCTTTCTTAACCTTTATCGCTTATCTTCTCCTCATTCACACCTTTTCC
CTCACCCCTTTCTTTCTTCTCTCCCCCTTCCTCCATTTTCACTATTTCTT
TCTTTCCTCCTTAGCTTTCTTCTCCTCTTCTCCCTTTTATCCTTATCTTT
TGCGCGCCACTCACTTTTAATTTTTTTTCTCCACATATTAATACCCCCCT
CATCC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTATCTCCGAAATTCTATTTTATTGAAAGCAGCATTTC
TGCTGCCCCACCCCCACCTCCCACCCCCCAGTGAGGTCTGGTGTGTTGGA
GGCAGCAGATGAATGTTGGTTGAATGAATGTCCACAGGTCTGGCTGGAGG
GGGAACTGCAACAGTATGGATCAGCAGTTTGCTGACTCAGCAGAGGGTTG
GGCACCTCGGAGCTGCTGCCTCTGACTCATTGGCTCAGAAGGGTGTCTGA
TGGCTGGCAGAATCCTGCCTATCCCGAAAGCCTCAGCCTGGACCTTCCTC
TGCCCCCTTACTGCTTTCTTATCTTTCCCTGCTCCCCTTCACGTGCCACC
ACATACTTGCTGCTCTGAACCCCCATGAGTCATCACAGAGGAGTCCCCAG
CCTTTGAACCTCTTTGAAAGGTGGCACCTCAGTGACGCAGTCTTCTTTCC
AACCTAGAAGATCTGTAGTTCTGGAAGTACTATTGTGTTAGCGATTTCTT
GGTCACTTGTACCAAACTTTTGGCAGGAACAAACCTATGTAATGATTGAT
TCTGTCTTCATTATTCATATTACCGCCTCGATGTTTTTTATTAATTGTAC
TTGTTTGTTCTTTTTTCTTTTTGTCCTACTTTCACTAACTTCGTCTCCTA
TTATTCTATCTTATCTCTTTTCATTATTTACCCTTCTTTTTTCAGTCTCA
TGATTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_n18.g1 MSMg01no263_n18.g1 CHROMAT_FILE:
MSMg01no263_n18.g1 PHD_FILE: MSMg01no263_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:54 2005
         (491 letters)



>mm_chr4_127235683_127236573
          Length = 891

 Score =  810 bits (419), Expect = 0.0
 Identities = 473/491 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctattttattgaaagcagcatttctgctgccccacccccacctcccaccccccagtg 60
           |||||||||||||||| |||||||||| | ||||||||||||||| ||||||||  ||||
Sbjct: 201 attctattttattgaaggcagcatttccgatgccccacccccaccccccaccccagagtg 260

                                                                       
Query: 61  aggtctggtgtgttggaggcagcagatgaatgttggttgaatgaatgtccacaggtctgg 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 261 aggtctggtgtgttggaggcagcagatgaatgctggttgaatgaatgtccacaggcctgg 320

                                                                       
Query: 121 ctggagggggaactgcaacagtatggatcagcagtttgctgactcagcagagggttgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggagggggaactgcaacagtatggatcagcagtttgctgactcagcagagggttgggc 380

                                                                       
Query: 181 acctcggagctgctgcctctgactcattggctcagaagggtgtctgatggctggcagaat 240
            ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gcctcggagctgctgcctctgattcattggctcagaaaggtgtctgatggctggcagaat 440

                                                                       
Query: 241 cctgcctatcccgaaagcctcagcctggaccttcctctgcccccttactgctttcttatc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 cctgcctatcccgaaagcctcagcctggaccttcctctgcccccttactgctttctaatc 500

                                                                       
Query: 301 tttccctgctccccttcacgtgccaccacatacttgctgctctgaacccccatgagtcat 360
           |||||||||||||||||||||||||||||||||||||||||||||| |   |||||||||
Sbjct: 501 tttccctgctccccttcacgtgccaccacatacttgctgctctgaatctttatgagtcat 560

                                                                       
Query: 361 cacagaggagtccccagcctttgaacctctttgaaaggtggcacctcagtgacgcagtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacagaggagtccccagcctttgaacctctttgaaaggtggcacctcagtgacgcagtct 620

                                                                       
Query: 421 tctttccaacctagaagatctgtagttctggaagtactattgtgttagcgatttcttggt 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 621 tctttccaacctagaagatctgtagttctagaagtactattgtgttagcaatttcttggt 680

                      
Query: 481 cacttgtacca 491
           |||||||||||
Sbjct: 681 cacttgtacca 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)