XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTTAAGGTACCCATGACCTTTAAAGGCACACATTTCTAAAGTGTCTG
ACATTTGGCTAACAATGGGGTTCATGTTTTAAGTGAGGTCAGGAATGAGT
AGTCAGTTAAAATTTTTAAAAAGCTTTATTTTGGTAGGCTTTAACAAATG
CAAAGATATTCAAGGCTATTAGAAGAATGAATCCCAATGAGGAAAATTAG
AATAAATTAAAATATTGCTCAACAATTTAATTAACCTTTTGAAATTGCAA
AGCAAATCAGGTAATGCCACATTTTGCTCATGTTACCTTAGTGAGACACT
ATACACATAGAAATTATACTCAAATTATGTCATTGCTAACATTTTTCTGA
GGTAAGTTCTAACTCCTTTTGCTACTCTGCAGTAATATTTACTACTTAGA
AATTAAAAAGTTCCAAACAATCTCATCACTAGTAATCTATTATATTTACA
TCAACGTGTTTTGCTTTTATTAGTGCACATGTTTACTTATTTTGAGAGGA
AAACAAACACTCAAATGCGGTTTGAATAGCTCCAATTGCATAAATATAAA
GAAGATCCTTATTATAGTATGCAAGTAAGTAATGTTTTGGTCCCTGGGCT
AAGCATATTAACTATTCCACCAATATGAGGAATACATATAACTGCCTTTT
GGAAACATTTCTGCCTAATACGTAACTGATAGAACCTTCATCCCACTACT
GGCATGGCAGG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGAAATACCGAATGTCT
GAGAAGCACCTGAAAAAATGTTCAACACCCTTAATCATCAGGGAAATTCA
AATCAAAACAACCCTGAGATTCCACCTCATACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
GTCAGTCTGGCGGCTCCTCAGAAAATTGGACATAGTACTACTGGAGAATC
CTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAG
AAGGACGCATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGAATACAGAAAA
TGTGGTACATTGACACTTGAAATTTAAACCAGCTTTTTTGTTTCCAAATT
CTTCTTTTCTATTGCTGGTGACTAAATGAGTGAGGTTTGGCAAAGATATG
GGTTTCTCTTTACATTACTTTGTTAGCATAGATAGTAGGCTAATTATTTT
GATACATTTATAGATTTGGCTTCCTATGAATTATGGCATTTATGAGCTAA
AATAAGAAATAGTAAGTGCTTAATCGGGAATTTTAACG

Query= MSMg01no263_p08.b1 MSMg01no263_p08.b1 CHROMAT_FILE:
MSMg01no263_p08.b1 PHD_FILE: MSMg01no263_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:01 2005
         (495 letters)



>mm_chr4_15430406_15431301
          Length = 896

 Score =  899 bits (465), Expect = 0.0
 Identities = 489/499 (97%), Gaps = 7/499 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacctttaaaggcacacatttctaaagtgtctgacatttggctaacaatggggttcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacctttaaaggcacacatttctaaagtgtctgacatttggctaacaatggggttcatg 260

                                                                       
Query: 61  ttttaagtgaggtcaggaatgagtagtcagttaaa-atttttaaaaagctttattttggt 119
           ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 261 ttttaagtgaggtcaggaatgagtagtcagttaaacatttt-aaaaagctttattttggt 319

                                                                       
Query: 120 aggctttaacaaatgcaaagatattcaaggctattagaagaatgaatcccaatgaggaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aggctttaacaaatgcaaagatattcaaggctattagaagaatgaatcccaatgaggaaa 379

                                                                       
Query: 180 attagaataaattaaaatattgctcaacaatttaattaaccttttgaaattgcaaagcaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attagaataaattaaaatattgctcaacaatttaattaaccttttgaaattgcaaagcaa 439

                                                                       
Query: 240 atcaggtaatgccacattttgctcatgttaccttagtgagacactatacacatagaaatt 299
           |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 atcaggtaatgccacattgtgctcatgttaccttagtgagacactatatacatagaaatt 499

                                                                       
Query: 300 atactcaaattatgtcattgctaacatttttctgaggtaagttctaac---tccttttgc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||   |  ||||||
Sbjct: 500 atactcaaattatgtcattgctaacatttttctgaggtaagttctaacattt--ttttgc 557

                                                                       
Query: 357 tactctgcagtaatatttactacttagaaattaaaaagttccaaacaatctcatcactag 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tactctgcagtaatatttactacttagaaattaaaaagttccaaacaatctcatcactag 617

                                                                       
Query: 417 taatctattatatttacatcaacgtgttttgcttttattagtgcacatgtttacttattt 476
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 618 taatctattatatttacatcaatgtgttttgcttttattagtgcacatgtttacttattt 677

                              
Query: 477 tgagaggaaaacaaacact 495
           |||||||||||||||||||
Sbjct: 678 tgagaggaaaacaaacact 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 896
Length adjustment: 10
Effective length of query: 485
Effective length of database: 886
Effective search space:   429710
Effective search space used:   429710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)