Query= MSMg01no264_c02.b1 MSMg01no264_c02.b1 CHROMAT_FILE:
MSMg01no264_c02.b1 PHD_FILE: MSMg01no264_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:14 2005
(671 letters)
>mm_chr4_114155509_114156583
Length = 1075
Score = 1122 bits (580), Expect = 0.0
Identities = 650/684 (95%), Gaps = 23/684 (3%)
Strand = Plus / Plus
Query: 6 aattccaggaatttaca--tgccctctcttcgggtagcagttttcttaccactagcatga 63
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aattccaggaac--acagatgccctctcttcgggtagcagttttcttaccactagcatga 254
Query: 64 tggtgatagggaggctctcaacagtgtctaggtggccttggcagggctttggtgcccttc 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 255 tggtgatagggaggctctcaacagtgtctaggtggccttggcagggctttggtgtccttc 314
Query: 124 tggcttgtaactccccaagatgccacttaggttacctgcagttccaggtatatatcatgg 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tggcttgtgactccccaagatgccacttaggttacctgcagttccaggtatatatcatgg 374
Query: 184 gtgtccttaaagagctaagcctggactttctttatgtcagtaggaggcatgagggcactt 243
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 375 gtgtccttaaagagctaagcctggactttctttatgtcagttggaggcatgagggcactt 434
Query: 244 gttttgtagagagccataagtatatccatggacctggaacagaaaagcagatagaaatag 303
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gttttgtagagagtcataagtatatccatggacctggaacagaaaagcagatagaaatag 494
Query: 304 gactatatcctagtggacc-----------agtacaataatgatggatgttcaaggggat 352
||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 495 gactatatcctagtgga--tataatataatagtacaataatgatggattttcaaggggat 552
Query: 353 cctggctgggtccagctcatgatatacccagcaaattagccaccacttgccaatgaatat 412
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 553 cctggctgggtccagctcatgatatacccagcaaattagccgccacttgccaatgaatat 612
Query: 413 ataagtgactg----gaacctcctcctacaacaaaggggacatatcggtatctaatgtag 468
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ataagtgactgactggaacttcctcctacaacaaaggggacatatcggtatctaatgtag 672
Query: 469 gaaagacagaaagagtggctgtatgagtgaatgaatcaaggaatgaactgtttaaagaag 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gaaagacagaaagagtggctgtatgagtgaatgaatcaaggaatgaactgtttaaagaaa 732
Query: 529 tctaaatccacctcatttctttatcaaaaacactgatacaaattcaatttagaattggaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tctaaatccacctcatttctttatcaaaaacactgatacaaattcaatttagaattggaa 792
Query: 589 tttggaaatttgacagtgtcataaagag-tatatgcattttaacaccctgtagtatcctg 647
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 793 tttggaaatttgacagtgtcataaa-aggtatatgcattttaacaccctgtagtatcctg 851
Query: 648 gagtagcatccacaatctagctaa 671
||||||||| |||||||||||||
Sbjct: 852 gagtagcatttacaatctagctaa 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1075
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1065
Effective search space: 703965
Effective search space used: 703965
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no264_c02.g1 MSMg01no264_c02.g1 CHROMAT_FILE:
MSMg01no264_c02.g1 PHD_FILE: MSMg01no264_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:14 2005
(249 letters)
>mm_chr4_114330634_114331282
Length = 649
Score = 451 bits (233), Expect = e-131
Identities = 245/249 (98%)
Strand = Plus / Minus
Query: 1 tctggtcagtgtttatttcttccttctcttccccaccatagaccctctttgtctatgccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tctggtcagtgtttatttcttccttctcttccccaccatagaccctctttgtctatgccc 390
Query: 61 tttccatttgggtatccagtcttcccatgatgctttgtgaaggttccagccccttacggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 389 tttccatttgggtatccagtcttcccatgatgctttgtgaaggttccagccccctacggg 330
Query: 121 gatgcttcttccatcccagtgccacctgtctggatgggcttccagcaccttcactagcac 180
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 329 gatgcctcttccatcccagtgccacctgtctgaatgggcttccagcaccttcactagcac 270
Query: 181 acagcttcctgtacagcagaggggaaggatatcctgcaccaacagctacaacttgcacgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 269 acagcttcctgtacagcagaggggaaggatatcctgcaccaacagctacaacttgtacgt 210
Query: 241 ataatgaaa 249
|||||||||
Sbjct: 209 ataatgaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
