BAC Information

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BAC

Clone NameMSMg01-264G11
Chromosome4 (Build37)
Map Location 116,557,649 - 116,557,926
singlet/doubletsinglet
Overlap geneZswim5
Upstream geneKncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048
Downstream geneUrod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264G11.T7 (MSMg01no264_g11.b1)MSMg01-264G11.TJ (MSMg01no264_g11.g1)
ACCAG405960AG405961
length689829
length of high quality
(start - end)
278 (407 - 684)234 (182 - 415)
definitionCHROMAT_FILE: MSMg01no264_g11.b1 PHD_FILE: MSMg01no264_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:34 2005CHROMAT_FILE: MSMg01no264_g11.g1 PHD_FILE: MSMg01no264_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATTCCGAGAGGATGGGNGGAANNNNNGATTTTCACAAAAAATGTAGN
ANGAAGGGTTGGTGATNTAGAATAGNTTGAGNCCATTATTTCCAGATAGC
ATAAGGTAAAATAANAAGACTTCTTCCCCCAAAGTAACAANCAACCAACC
AGGCAAGCAAGTAAGCAAACTAACAAAGAGCAACACACTCACATCCAGAA
AAACAAAAACCAACAGCAAAAATCCTGAAGGGAGAAGGGAGATAAGCCTG
AATTTTTAGTGTGAGCATGTTATAGGAAGTGACAGTTGATACTCCAAACC
TGCCTATATAAGCCTCACAGCATCATATGNGGTCNGTCCCCCCCCCCCCC
CCCATTTTNNAAATATAAGAAATATATATGAGNCGTCTAAAGAAGNCACC
CAAAGACCAGAGTTTTAGATTTCAAAGATAATGGGCAGGCTAAAGAGCAG
ATTTCATTTTACACTAATGTCTTGGTACAGGTGCTGTGGCTGAGTGCTGG
AGGGTTTGCCTAGAGTGCAGGCCAGTCCCCAGCAGCACAGTTTTTAAATG
TGTTTTACTGCACACATATGCTTCACAATACAGTTTTACACAGAAGCTGG
AAGCACTTTCCTTCGTATTTTGCAGAAAGGCTAGAAACATGAGGACTTTC
TTTAATATATCAAAGTACAGCCACAATTTTTAAGATAAA
AAAAAAACTAAAAATTAATTTTAATATAAAATAAATCTCCTTTANTTTTC
CTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGCAGAGAGCCTTTTGGACA
TCTTTGGTTGTAACCACGATGACTTCTCCAGGATGAAAGAGATAATCGAC
AAATGCAGAAATTCATTCACTGAGACAATTTCCATCTCCCCGTCAGACGG
GCTCTGCTGTAGGCCACACGCCTGTAACCCAGCCCCCAAAGGGGGACAGA
GGATCAGGGACAAGGCCATCCTTGTCTACACACAAGTTCAAAGCCAGCGT
ATAGAATCACAAATGATAAATGCTAATATGACTGAGCCTTTTCTTTTCTT
TTTAAATAAAAACCTGTTTTTTTTTCAACACCCCCCCCCCTTTTCAGATC
CTCTGAGCATTCTGTGACCCAGCCGTACTTGCCCAAGACTGGCACCACCT
CATAGCTGGGGAACTTTAAATGTACCATACGGGGAAGATAGAAAATGACT
CCTGGGCTGGCAAGATGGCTCAGAGGTTAAATAGCGCCGACTGCTCTTCC
AAAGGTCCCGAGTTCAAATCTCAGCTACCACATGGTGGCTCACAATCATC
CATAATGAAATCTGATGCCCTCTTCTGGAGAATCTGAGGACCGCTACTGT
GTACTCATCTATAAAAAATTAAATTAATTAATTAATTTTAATAAACAAGA
AATAGATATGGACTCCCTATATTTCTAACCAGTGTGGGTTTGAATGACCA
TCTATTCGCAATTTCCTTCATGGCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_g11.b1 MSMg01no264_g11.b1 CHROMAT_FILE:
MSMg01no264_g11.b1 PHD_FILE: MSMg01no264_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:34 2005
         (278 letters)



>mm_chr4_116557449_116558126
          Length = 678

 Score =  522 bits (270), Expect = e-153
 Identities = 276/278 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagagttttagatttcaaagataatgggcaggctaaagagcagatttcattttacacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ccagagttttagatttcaaagataatgggcaggctaaagagcagatttcattttagacta 260

                                                                       
Query: 61  atgtcttggtacaggtgctgtggctgagtgctggagggtttgcctagagtgcaggccagt 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtcttcgtacaggtgctgtggctgagtgctggagggtttgcctagagtgcaggccagt 320

                                                                       
Query: 121 ccccagcagcacagtttttaaatgtgttttactgcacacatatgcttcacaatacagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccagcagcacagtttttaaatgtgttttactgcacacatatgcttcacaatacagttt 380

                                                                       
Query: 181 tacacagaagctggaagcactttccttcgtattttgcagaaaggctagaaacatgaggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacacagaagctggaagcactttccttcgtattttgcagaaaggctagaaacatgaggac 440

                                                 
Query: 241 tttctttaatatatcaaagtacagccacaatttttaag 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctttaatatatcaaagtacagccacaatttttaag 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)