BAC Information

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BAC

Clone NameMSMg01-264L08
Chromosome4 (Build37)
Map Location 44,381,300 - 44,381,613
singlet/doubletsinglet
Overlap genenone
Upstream gene4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk
Downstream genePax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264L08.T7 (MSMg01no264_l08.b1)MSMg01-264L08.TJ (MSMg01no264_l08.g1)
ACCAG406179AG406180
length746930
length of high quality
(start - end)
319 (46 - 364)160 (76 - 235)
definitionCHROMAT_FILE: MSMg01no264_l08.b1 PHD_FILE: MSMg01no264_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:58 2005CHROMAT_FILE: MSMg01no264_l08.g1 PHD_FILE: MSMg01no264_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTAGACCAGGCTGGCCTAGAACTCAGAAATCCGCCTGCCT
CTGCCTCCCGAGTGCTGGGATTCAAGGCGTGTACCACCACTGCCTGGCAG
AAGGTTATCTTTTAAAGTCACTTTTATTACAACAATATCCTGGTGTCTTA
GTCTCTTTTCCTGACAGTGCGATAAAACTTAGGTGGGAAGGGGTTTATTC
TGGCAGAGCTAACAGTCACTGTGCCTGATCACACAGGATCCACAGGCACA
AAGCAGACATCGACAACTCATTTAGTCCAGGACCCCGCCCAAGAAAAGGT
GCCATCCATATTNATGGTTGTGCCTTNCCANNACCTAATCCAGTCAAGAC
AATACCCCACAGGCAATTCTACATTCTAGATAAAATGATAATTGATACTA
ACCATAACAACTGGAGGTCCTAGCCCAAATGATATAATAAGAAATGGAAA
AGGGGCATGCAGATTCGAAAAGGCAAAAGATGCCTGTGTTCACAAATGAT
ATAGTTACATGTACAGAANACACTTACAAATCTACCTCAAAAAGCTACTA
GAATATATAAATTTAGGAAAGTCACTACATAGATGAATAATAGACAGATG
ATAGATAGATAGAGGAATATATAGATAGTAGATAGATGGATAGATGATAG
ATANACTGCNNNTTNGATTGGTGGTTANATTTTATTATTTTTTTAG
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGACAGGGCTATATATAGA
GACCCTGACTCAAAAAAACAAAAAGAAACAAGAAGAAGAGGAAGAGCAGG
AGGAAGAAGAAGGAGAGGAAGAGGAAGAGGAAGAAGGAGGAGAAAGAGAA
GGAGAAGGAGAAGAAGGAGGAGGAGGAGGAGGAGTTGTTTTTTCTTTAAT
TTTTTTTTTTTATATGGATTCCTCCTATTTCGTGTATTCTTTTTTACAAT
TTTTTTTGTTTATATATTGTTGCTTTTTTTTTTTTTTTATTGTATCTTCT
ATTTTTTATTATATTGAAGTTTTTTGGGTGGGTTTTCCCCGTAGACGGGG
CCCCCTTTTTTTTATTTTATATTGAGTGTATTTATTTGTTGTTCTTTTGA
ATAAAAATAAAAAAAAAAAACGTGGTGGGTGGGGGGGGTGTTGTTTTTTG
TACTATTTAATTACTATAACCATCGGTGTTGTATTTATTTTCTATACGTT
TTTTTATTTTCTCTTATGTTTTTGTTTTGGCCTTTTTTTATTGTGTTGAT
AATTAACTCTTTCTTCGGTGCAATCTCTTCTTCTTACACTTTTGTTATTT
TATGTGTGTTGGGTGCGTTTTATATATACTTTTCACTCTGCTTTGCCACT
ACTCTCCTCCCAGTCGCTATTCTTACTTTGTATTTATTCTTTATATTTTG
TTTTGTTTTCCTTTGGTCCAACTACACCTCCACTCTTATTTTCTTATATC
ATCATTATATATTTACTGTATCTACAATCTTTACACTTGCTCATGCGGGC
GCGTTCTCATCGTGCTCACTTTTAAATTTTCCTGCTGGTTGTTTTTATCT
TAATTATTGGTGTTGCTTTTGTTTCTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_l08.b1 MSMg01no264_l08.b1 CHROMAT_FILE:
MSMg01no264_l08.b1 PHD_FILE: MSMg01no264_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:58 2005
         (319 letters)



>mm_chr4_44381085_44381803
          Length = 719

 Score =  569 bits (294), Expect = e-166
 Identities = 309/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtagaccaggctggcctagaactcagaaatccgcctgcctctgcctcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ggaattcactctgtagaccaggctggcctagaactcagaaatccgcctgcctctgcctcc 470

                                                                       
Query: 64  cgagtgctgggattcaaggcgtgtaccaccactgcctggcagaaggttatcttttaaagt 123
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 469 cgagtgctgggattcaaggcgtataccaccactgcctggcagaaggttatcttttaaagt 410

                                                                       
Query: 124 cacttttattacaacaatatcctggtgtcttagtctcttttcctgacagtgcgataaaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cacttttattacaacaatatcctggtgtcttagtctcttttcctgacagtgcgataaaac 350

                                                                       
Query: 184 ttaggtgggaaggggtttattctggcagagctaacagtcactgtgcctgatcacacagga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttaggtgggaaggggtttattctggcagagctaacagtcactgtgcctgatcacacagga 290

                                                                       
Query: 244 tccacaggcacaaagcagacatcgacaactcatttagtccaggaccccgcccaagaaaag 303
           ||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||
Sbjct: 289 tccacaggcacaaagcagacatcgacaactcagccagtccaggacccagcccaagaaaag 230

                         
Query: 304 gtgccatccatatt 317
           ||||||||||||||
Sbjct: 229 gtgccatccatatt 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)