TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTACTTTGCGTAAGCTGGGTTGGAAATCATAGAGATCTATCTGCC
TGCCTCTACCTCCTGGAATTAAAGGCATATGTTGCCACGCCCAGCTTATT
TTATTATTTTTTTCAGTCAAAGTATCACTATATAACATTGGCTGGCAGGG
AACTCATAGAGATTGATACACATGCCTCTGCCTAATAGAGAGTTTTCTAA
CTATTTAGAAATTTTTAAATTATCAGACATAGTCTTAGAATTTCATCTTT
GCAAATCTCCCCTTCTTTTACTTGTCTTATAAGTAGTTACCCAACTTTTC
TATGTCAATGATATGCACCATCTACATAAATATCATTTAACTTTTGTAAT
CTGACCTACTCACTTAAAAATGTTTACAGATAAAAAACATCCTCTATCAA
ATAATTCTAGGAGAGTATATACATACTTGTCTGAGTGTAAACTTTAAATA
CCTGAAATAAGAAAACAAAGGATCTTATTAAATTTATAAAGGGAATTATT
TTTGATATACTGAGTGGCATATTTAACCAACTCAGCATAGCTACTGACAA
TAACATCATTATCTCTGATAGATATCGATGACCTTCAGTATTAATAAGAC
ATGAGGTTTAGAGTTTGATTCCCCTATAACCTCTTTGAAAAAGAATTATC
AGAGAAGCCTACCATGTGTAN

ACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTAGGTTTGGTGAATTTAG
GTGTGTGATGATTTTTAATGGAAACATGATTGTAATTATTTTATAACAAG
TCGTATATGTATATGTATATGTATATGTATATGTATATGTATATGTATAT
GTATATGNNNNNGNNNNTNNNNNNNNTNNTCTTTTTTTCCCTCTTCATCC
CCTCTCTTTTCTTCCCCCTTCCCTCCTCCCCACCTCCATTCTTATCTCTC
ACTTTCCTCTCTCTTCACCACCTCTTTTTTTTTTTTTTATTATAATATAC
CAAACTATAAATATCATTTTTTTTTTTTTTTTCCCCCCCCCACCCCCCCT
TTTTATTAATATTTTTATTCAACACCCCCCCCCCTCTATTAAAAAAAAAA
ATAAATATTCCTTACCGTACCGTCCCCCCCTCATTACTATACATCTTACA
ATCATAATAAATACATCTACTCTCAAAACCTACATATTTACACATCATCA
CTTCAACTACCACCATTCAAATCCCACATTAACTCATCACCTTTTAACAC
ACATTCACATTACTTTATTTAACTTTAACCTAACCCCCTCTTGTCTCACT
ACCATCTACTTACTATCCTCTCTATATTCCATCACTCTTTTATCTACAAC
TCATTTAACCACCTATAAACTTCTATAACATTTCACTCACTTAATACTTA
CTACTACGTATAACACCCTAACACCTACCAAGCAACAACCACATAAACCC
CATATTATAAAAACCCCACCACTACTATTTTCCCTATATATATCTCTCTC
CAGTTCACTCAACATCCTCTAT

Query= MSMg01no264_m11.b1 MSMg01no264_m11.b1 CHROMAT_FILE:
MSMg01no264_m11.b1 PHD_FILE: MSMg01no264_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:03 2005
         (652 letters)



>mm_chr4_71349002_71350053
          Length = 1052

 Score = 1220 bits (631), Expect = 0.0
 Identities = 646/651 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctgggttggaaatcatagagatctatctgcctgcctctacctcctggaattaaaggcata 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 ctgggttggaaatcatagagatctatctgcctgcctctacctcctggaattaaaggcata 956

                                                                        
Query: 61   tgttgccacgcccagcttattttattatttttttcagtcaaagtatcactatataacatt 120
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955  tgttgccacacccagcttattttattatttttttcagtcaaagtatcactatataacatt 896

                                                                        
Query: 121  ggctggcagggaactcatagagattgatacacatgcctctgcctaatagagagttttcta 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895  ggctggcagggaactcatagagattgatacacatgcctctgcctaatagagagttttcta 836

                                                                        
Query: 181  actatttagaaatttttaaattatcagacatagtcttagaatttcatctttgcaaatctc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835  actatttagaaatttttaaattatcagacatagtcttagaatttcatctttgcaaatctc 776

                                                                        
Query: 241  cccttcttttacttgtcttataagtagttacccaacttttctatgtcaatgatatgcacc 300
            |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 775  cccttctcaaacttgtcttataagtagttacccaacttttctatgtcaatgatatgcaca 716

                                                                        
Query: 301  atctacataaatatcatttaacttttgtaatctgacctactcacttaaaaatgtttacag 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715  atctacataaatatcatttaacttttgtaatctgacctactcacttaaaaatgtttacag 656

                                                                        
Query: 361  ataaaaaacatcctctatcaaataattctaggagagtatatacatacttgtctgagtgta 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655  ataaaaaacatcctctatcaaataattctaggagagtatatacatacttgtctgagtgta 596

                                                                        
Query: 421  aactttaaatacctgaaataagaaaacaaaggatcttattaaatttataaagggaattat 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595  aactttaaatacctgaaataagaaaacaaaggatcttattaaatttataaagggaattat 536

                                                                        
Query: 481  ttttgatatactgagtggcatatttaaccaactcagcatagctactgacaataacatcat 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535  ttttgatatactgagtggcatatttaaccaactcagcatagctactgacaataacatcat 476

                                                                        
Query: 541  tatctctgatagatatcgatgaccttcagtattaataagacatgaggtttagagtttgat 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475  tatctctgatagatatcgatgaccttcagtattaataagacatgaggtttagagtttgat 416

                                                               
Query: 601  tcccctataacctctttgaaaaagaattatcagagaagcctaccatgtgta 651
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415  tcccctataacctctttgaaaaagaattatcagagaagcctaccatgtgta 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)