BAC Information

Click to search

BAC

Clone NameMSMg01-265H05
Chromosome4 (Build37)
Map Location 29,085,898 - 29,086,184
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040735, LOC230044, LOC665141, LOC100040773, Epha7, LOC100040907
Downstream geneLOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265H05.T7 (MSMg01no265_h05.b1)MSMg01-265H05.TJ (MSMg01no265_h05.g1)
ACCAG406709AG406710
length749831
length of high quality
(start - end)
332 (6 - 337)287 (128 - 414)
definitionCHROMAT_FILE: MSMg01no265_h05.b1 PHD_FILE: MSMg01no265_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:56 2005CHROMAT_FILE: MSMg01no265_h05.g1 PHD_FILE: MSMg01no265_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATAGGGAGAGGATCCGCGGAATTCTCAGCAGAGAAATTCCTAGTGGT
TATAAAGAGAAACACTTAAATAAATGTTCAACATTGTTAGTAATTAGAGA
AATGCAAACGACTCTGATTGATACTCTATCTGATATCCATCAGAATAAAC
AAGATCTAAAGCTCATGTGACAGCACATGTTGGTGAGCAAGGGGAACACT
TCACCATTGCTGATGGGAGTGCAAACGTATACAACTACTTTCAAAATCAA
TCTGGTGGTTTCTCAGAAAATTGGGAATAATTCTACCTCAAGACCCAGCT
ATACCACTCCTGGGAATAATATCCAAAAGATGATCCTTTTTATTATAACC
CCCCCCCGCTCAACTATCTTCATAGCAACTTTATTCATAACAGCCAGAAA
CTGGAAACAGATTAAACGATGGTCCTCAACTGAAGAATGAGTAAAAAAAC
TATGGGACATTTACACAATGCATTAGTACCCTATCTAAACATCTACATAA
TTTAAAGACATTATGACATCCATTGCAGGCTAATGGATGGAACTGGAAGC
TATCGTCCTGAATGAGGTAATATAGACCTAAGTAAGACATTCATGATATG
TACTCATTTATCTAGATATTAGCCCTAAAGTACAGGATAACCATGCTACA
ATCTAACAACCCCAAGAAGCTTATTTTCAGATGAATATCCGAGAAAAAAT
GGTTGAATCTTCCTCCTAAAGGAATATATAAAAAACATCAAAGGTGCGG
TTCTTTTTNCTTGTTCCNCCGCCCTTTTATTTTTTTTTTTTTTNNNNNTT
TCGAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTCATTAGAATTAATATTAAAA
GCATCTTTTCATTGTTTTCATTATCATTCAGATATTGACTCTTGTGCACT
TCTACCTACTGACATGGTGTTGCCTCTGCATGGTATTCAGGGTGATTTTT
CTCAAGATGGAATAACTATTAGATCATGTTTCCCTTTAAAAAAAATCTAG
CCATTTCAATATTTTGAGACCAAAATTTTGTCTTCTGCCTATTTAACATT
TTGCTAAAAATATCTCTTTCTCAGCCACCAAAGAGAACTCTTAAAATTTG
TATTTAAGGATGCTGTATTTTTTTTTTTCCCCCCCCCCCACTTTTGTAAT
GTGTACTGGTAAGAAAGGACTTACTTTTCTTTAAAAAACTAGCCAATGAG
AGTTTAACCATGTTTCAGTGAGTATATGGGCAACATAAGTTGGTCTTGTT
TTTATTTATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTTCTTCTTCTTTTCTTCTTCTTCTTTT
CTTCTTCTCCTTTTTCTCCTCCTCCTCTTTCTTATACTTACTACTACCTC
CTTCCTCATTCCTCCTTTTATTTTCTACTATTATTTCTTTCTTAATTATA
TTTTTATAATTCTTTGCAACGAATTTATCACACTTTTTACCACAGCTCCC
TCAATTTTTACTCATGTTCTATTTTCAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_h05.g1 MSMg01no265_h05.g1 CHROMAT_FILE:
MSMg01no265_h05.g1 PHD_FILE: MSMg01no265_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:56 2005
         (287 letters)



>mm_chr4_29085740_29086426
          Length = 687

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcattagaattaatattaaaagcatcttttcattgttttcattatcattcagatattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attcattagaattaatattaaaagcatcttttcattgttttcattatcattcagatattg 386

                                                                       
Query: 61  actcttgtgcacttctacctactgacatggtgttgcctctgcatggtattcagggtgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actcttgtgcacttctacctactgacatggtgttgcctctgcatggtattcagggtgatt 326

                                                                       
Query: 121 tttctcaagatggaataactattagatcatgtttccctttaaaaaaaatctagccatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttctcaagatggaataactattagatcatgtttccctttaaaaaaaatctagccatttc 266

                                                                       
Query: 181 aatattttgagaccaaaattttgtcttctgcctatttaacattttgctaaaaatatctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatattttgagaccaaaattttgtcttctgcctatttaacattttgctaaaaatatctct 206

                                                          
Query: 241 ttctcagccaccaaagagaactcttaaaatttgtatttaaggatgct 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttctcagccaccaaagagaactcttaaaatttgtatttaaggatgct 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)