BAC Information

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BAC

Clone NameMSMg01-265O11
Chromosome4 (Build37)
Map Location 28,240,037 - 28,240,325
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735
Downstream geneLOC230044, LOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265O11.T7 (MSMg01no265_o11.b1)MSMg01-265O11.TJ (MSMg01no265_o11.g1)
ACCAG407033AG407034
length755754
length of high quality
(start - end)
235 (125 - 359)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no265_o11.b1 PHD_FILE: MSMg01no265_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:33 2005CHROMAT_FILE: MSMg01no265_o11.g1 PHD_FILE: MSMg01no265_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATCTCTCCAATACTTTTAACATGAAGGAGTGCTGTATTTTGTC
AAATGTTTCTTCTGTATCTAACCCCATGAACATGTGAGTTTTTTTTTTTT
TTGAGTTTGTTTATATAGTGAATTACATTAATGGGTTTCCATATATTAGG
CCAACCTTTCATCTTTGGAATGAAGCCTACTTGATCATGGTAAATTATGG
CTTTGATGTGTTCTTGGATTTTATTTGCAAGAATTTTATTTTATTTTTTT
GCATTGATATTCATAAGTGATATTGGTCTGAAATTCTATTTTTTCATTGG
GTCCTTGTATGANATGNATTCCCCCAACTGCCCCTTCATAGAATGAATTA
GGTAGTGTTGCCCCCCCCCCATTTTATGAAAAAAAAAGAGGAAAATTGAC
TTCAGGTCTTCTTTAAAGGTCTAATAGAATTCTGCACTTGGTCCAAGGGA
ACAAGCATCATAATATCCAATTTGATTTTTTTGTTTGTTTGTTTTTGGTT
GGAGGTTTTAAATGACTTCTTCTGATTTCTTGTGTGATATGAATCTTGTT
GTGTTCGGCCAGTACACCACAACCTGTATTCTACCCTGATTAGGCATTTT
TGTAACCTGATACATAATATTTCTTATTTGCCTAACAAAACCAACGAACT
CCATATCTCTCTTCTGCACAACCTCTTTTTTTCTCTGCCCCCACTCCACA
CTCCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATTCAAATAACCAATACAAGAA
ATAACATAATTTTCAGATGAAGCACTATGTATCTTTATTCAATACTGTCT
ATTTTATTATAATCCAGACTATGATTTAGGCACTTAAAGTCACACTATTG
AAAGAAGCTGGGAATTTTTTTTCTTTACTGTGTGTTCACAATAAAAAGAA
AGTGAGCTTAGAGACAATATTTTGCATAACAATAATGTAGTAATCATAAA
AGCAAACTTTGAAATTAAAAGGGTAAACATCAAGTCACTTCTCATTTCTT
CTTTATAAAGCTTATTTTTTTTTATACCACCCCCCTCCTCGTTTTCTAAG
TAAGGATAATAATATTTAGCCCCCCCATTACTATGCATGCTATGAAAAAT
ATCTTCATGGAGCTTAGCATAGGATTTGATTTTGTGCTTGTAAGAATAAT
TATCTCTAAGGGTCACAAAAGTATATACCAAATTATTGAAATACAGTGAC
TACTTAAGCACAAAGCTTCAATTTCCCAGACTACTTCATAACTTCTTTTG
TATATTTCAAATATTCCTAAAGAATATAATTTGTTCCCAGAAGGTTTTCA
AGACTAATGACTTCAACTCCTACAATAATTCCTTAACCAAGCGAATCAAT
ATAACACTAATGCTTAACTTTCAGGCTTTAGCTTCTCTTAATTTAACTTG
CTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_o11.g1 MSMg01no265_o11.g1 CHROMAT_FILE:
MSMg01no265_o11.g1 PHD_FILE: MSMg01no265_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:33 2005
         (291 letters)



>mm_chr4_28239837_28240528
          Length = 692

 Score =  526 bits (272), Expect = e-154
 Identities = 285/290 (98%), Gaps = 3/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattcaaataaccaatacaagaaataacataattttcagatgaagcactatgtatcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattcaaataaccaatacaagaaataacataattttcagatgaagcactatgtatcttt 260

                                                                       
Query: 61  attcaatactgtctattttattataatccagactatgatttaggcacttaaagtcacact 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 attcaatactgtctattttattataatccagactatgatttaggcacttaaagtaacact 320

                                                                       
Query: 121 attgaaagaagctgggaattttttttcttt--actgtgtgttcacaataaaaagaaagtg 178
           ||||||||| ||||||||||||||| ||||  ||||||||||||||||||||||||||||
Sbjct: 321 attgaaagatgctgggaattttttt-ctttccactgtgtgttcacaataaaaagaaagtg 379

                                                                       
Query: 179 agcttagagacaatattttgcataacaataatgtagtaatcataaaagcaaactttgaaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agcttagagacaatattttgcataacaataatgtagtaatcataaaagcaaactttgaaa 439

                                                             
Query: 239 ttaaaagggtaaacatcaagtcacttctcatttcttctttataaagctta 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttaaaagggtaaacatcaagtcacttctcatttcttctttataaagctta 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 692
Length adjustment: 9
Effective length of query: 282
Effective length of database: 683
Effective search space:   192606
Effective search space used:   192606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)