BAC Information

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BAC

Clone NameMSMg01-266D21
Chromosome4 (Build37)
Map Location 81,943,065 - 81,943,377
singlet/doubletsinglet
Overlap geneNfib
Upstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164, EG545641
Downstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266D21.T7 (MSMg01no266_d21.b1)MSMg01-266D21.TJ (MSMg01no266_d21.g1)
ACCAG407284AG407285
length757755
length of high quality
(start - end)
313 (440 - 752)195 (128 - 322)
definitionCHROMAT_FILE: MSMg01no266_d21.b1 PHD_FILE: MSMg01no266_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:59 2005CHROMAT_FILE: MSMg01no266_d21.g1 PHD_FILE: MSMg01no266_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTTTTCAATATGTTTTTAAATCCCAAGGCCAGTATAGGCTGGC
ACACAGCTGACTGGTAAGATACACAGCTGCTGTCTCAAGCCACTCCCCTT
CTCTTTCTTGTCATCCTGACTGCATCCCAAATGTGCCATCATTCCTGGTG
GTAAGTCTGGGAATGCCCAGGCCCCTGTTGCCATCCAATTGAGGAAAAAA
AATGAATTGAAAGGAAATCTTTGGTTCTATCTAAGGAAATTATAGAGGAG
AGCAGGAAACCACCAGAGAACCCATTATTCCCCGAGCTGCACCCTCCACA
GTGGGCTTTTGTTTAAATGCATCCAGNTGCGNTACCCGTGGTCGAGGATA
GACATCCACTTGGTTGCCTAAAACTCTTCAAAAAAAAAAGATCATTAGGT
ATTTCACTATATATTGCACATGCCTGAAACTCTATTATTTTCTCACGTGA
GAGAAAAGAATATGTAGTTCATTACATTTTCAAATGTATGTAACCCAACA
GGTCGATAAACCCACCTCACCCAGAATGTTTTATGAATTAAAGATTAAAC
ACAACTAATGTATCTAGCAAACTACAGTAGTCTAGTATGGCTACAAATTT
ATGCTTTTCGTCTTTTTTGTTTGAACAATGAAAATCATATTGCATACAGT
GCATTGAAATGGGCCAGATATTTAAAAAAGAGTCTCCTTAATTAATTAGA
GTTCAGN
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAGTCTCAGCAATCCAGCTGTAGATGAG
TCTTTAGAACCTCAGTTCTTTGGCCCACACTGGGACATATAATTCCTCCT
TTTTTATTGATTATTTTATTTACATTTCAAATGTTGTCCTCCTTCTCAGT
CTCCCCTCCACGAACCCACCAACCCCTACCCCTCCCCTTTCCCTCTAAGA
AGGTGCTTCCCCACCCACCCAGCCACTCCTGCCTCACCCCCCTAGCACCC
CACTTTGCTGGGGCAACAAGTCTTTTTTTTACCAAGCCATTCCCATTGAT
GCCAGANAAGGTTTGGGTGGGTTCCAAAGCAAAAACCACGGGAGNNAAGG
ANNNANNNNNNNNAAAANNNNNNGGAAAGGGNAAAGNNNAAAGGGNNNGG
GNNGGGGNNGGANNNAGNNNNNNANAAANNAGANNGGGAAAANAGAANNN
NNGGGNNNAAAAANNNAANNNNANNNNNAGAGGGGAANANNAGNNGGGNN
ANNNAGAGNNNANNAAGGAANAANGGNAANANNNNNNNGGGGNNGGGNNN
NNNNNANNANNNNNNNNNNNNNNNNGANANANANANANANANANAAANAN
ANANANAAAGGGGGGANGGGNANAGAGGGNAGAGGGNAAAANNNANANAA
NNNANAAANNGGANNNNAAAAGAAGGGGAGAGANNNAAAGGGGAGGNNAG
AAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_d21.b1 MSMg01no266_d21.b1 CHROMAT_FILE:
MSMg01no266_d21.b1 PHD_FILE: MSMg01no266_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:59 2005
         (313 letters)



>mm_chr4_81942865_81943577
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatcattaggtatttcactatatattgcacatgcctgaaactctattattttctcacgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gatcattaggtatttcactatatattgcacatgcctgaaactctattattttctcacgtg 454

                                                                       
Query: 61  agagaaaagaatatgtagttcattacattttcaaatgtatgtaacccaacaggtcgataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agagaaaagaatatgtagttcattacattttcaaatgtatgtaacccaacaggtcgataa 394

                                                                       
Query: 121 acccacctcacccagaatgttttatgaattaaagattaaacacaactaatgtatctagca 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 393 acccacctcacccagaatgtcttatgaattaaagattaaacacaactaatgtatctagca 334

                                                                       
Query: 181 aactacagtagtctagtatggctacaaatttatgcttttcgtcttttttgtttgaacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aactacagtagtctagtatggctacaaatttatgcttttcgtcttttttgtttgaacaat 274

                                                                       
Query: 241 gaaaatcatattgcatacagtgcattgaaatgggccagatatttaaaaaagagtctcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gaaaatcatattgcatacagtgcattgaaatgggccagatatttaaaaaagagtctcctt 214

                        
Query: 301 aattaattagagt 313
           |||||| ||||||
Sbjct: 213 aattaactagagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)