BAC Information

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BAC

Clone NameMSMg01-266K02
Chromosome4 (Build37)
Map Location 76,783,746 - 76,876,191
singlet/doubletdoublet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266K02.T7 (MSMg01no266_k02.b1)MSMg01-266K02.TJ (MSMg01no266_k02.g1)
ACCAG407563AG407564
length732735
length of high quality
(start - end)		688 (45 - 732)658 (75 - 732)
definitionCHROMAT_FILE: MSMg01no266_k02.b1 PHD_FILE: MSMg01no266_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:27 2005CHROMAT_FILE: MSMg01no266_k02.g1 PHD_FILE: MSMg01no266_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(76,875,595 - 76,876,191)(76,783,746 - 76,784,109)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAGTGTGTTACCTGGCAATGCTTCTACTGAGCAGATGCTTTGGCC
TTAAGAAATGCTACTCATATCTTGCTATCTTCATGAGGAAAATGCAAAGC
TCTAATGCTTGTTCTTAATTTTCTTTTAGCAAGACTAAGACATGAAACAA
AAGTCAAAACCTAATACTAAAATTCTTGACAATAAAAATCATGTATAAGT
ATGATAAAATGTGATCGTGCTATTGAAAATTGTTCTTAATTGATAAAATA
TTTATGAGTCTGGTAACTATAATCTTCAATTATGTTTAAGTATTCAGCCA
TTCTTTCTAATCCTTAACTTCAGATGACACTCATAGTAATTACTTCCTGC
TCTATTCTAAAGAAACATGCTAGTCACTCTAATTTGTTCTGAAAATATTT
TAATGAATACATAATTAATTATAATTAATGTACAAATATTAATCTCTGGC
CCTGGTATTGCTTGCCCTAGCACAATTTAATGTAGTTATTCTGAGTGATT
ATCCATCCATTGACAGTATTGCCTTGATAGTGCATTTATAGTTTAAATTC
TTTTTGCAATATAAGTCAATCTGTATTTACCCACATCAGTGTGATATATC
TGATTTTGTTATTTAACTAAATCATTTTTATTTGCATATGATGCTTTTTG
AANATATATTTAATGGCTTCATAATATTGCAG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGATGTACTAAGAGGCATGTCTATG
GCAGGATGGCTTTCTGGGATTTATGTGGCATGTTTCAGTAAGAGACACAT
AGATACATGCACATATACCACAAACACATAAAATGTATAACAAATAGCAC
AGATTATTTAGTAATATACTTATGTTAATAAAATTCTGTTTACTTTGTCA
AAGTAATATCATCTGTATGTGGTTTTTCTTGAAACCTCTGAGTATTTATC
AATGTAGGGATAATATTTACATGCACTGGGTGAGGATGAGTCTCTGGTCT
TCCTTTCCTGCATAATATACTCTTTGCTTACAATAATAAGCCTATTTCCA
CTAGCAAAATGCAGAAGAGAAGATGTGATATCCAGCAGAGAAAGAGTAAA
TCTAGAAAAGTCAGGTGTGTGAAATTCACTACCAAGAAGCCAAGGAAGTC
AGACAAATGAGACTGTGGTGAGGGGTAATCAGCCATGTGGCAGAGCTTAG
ATTAGTATAAACGGGATAATTGAGTTATGAGCTAGTTAAGAACAAGCCTA
GCTTAAAATATTAAATAAAATCTATTTAACAGCCTAAAAGCTTATATTTA
CTTAATACTTTAAACTTATTAGAGAAATATAAGTTTGTGTCATTATTAAG
TACTGGGTGAGCATAGAAAGGCCTATGTTTACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_k02.b1 MSMg01no266_k02.b1 CHROMAT_FILE:
MSMg01no266_k02.b1 PHD_FILE: MSMg01no266_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:27 2005
         (688 letters)



>mm_chr4_76875595_76876682
          Length = 1088

 Score = 1116 bits (577), Expect = 0.0
 Identities = 592/597 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctaagtgtgttacctggcaatgcttctactgagcagatgctttggccttaagaa 63
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ggaattctaagtgtgtaaactggcaatgcttctactgagcagatgctttggccttaagaa 538

                                                                       
Query: 64  atgctactcatatcttgctatcttcatgaggaaaatgcaaagctctaatgcttgttctta 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atgctactcatatcttgttatcttcatgaggaaaatgcaaagctctaatgcttgttctta 478

                                                                       
Query: 124 attttcttttagcaagactaagacatgaaacaaaagtcaaaacctaatactaaaattctt 183
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 477 attttcttttagcaagactaagacacgaaacaaaagtcaaaacctaatactaaaattctt 418

                                                                       
Query: 184 gacaataaaaatcatgtataagtatgataaaatgtgatcgtgctattgaaaattgttctt 243
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gacaataacaatcatgtataagtatgataaaatgtgatcgtgctattgaaaattgttctt 358

                                                                       
Query: 244 aattgataaaatatttatgagtctggtaactataatcttcaattatgtttaagtattcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aattgataaaatatttatgagtctggtaactataatcttcaattatgtttaagtattcag 298

                                                                       
Query: 304 ccattctttctaatccttaacttcagatgacactcatagtaattacttcctgctctattc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ccattctttctaatccttaacttcagatgacactcatagtaattacttcctgctctattc 238

                                                                       
Query: 364 taaagaaacatgctagtcactctaatttgttctgaaaatattttaatgaatacataatta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 taaagaaacatgctagtcactctaatttgttctgaaaatattttaatgaatacataatta 178

                                                                       
Query: 424 attataattaatgtacaaatattaatctctggccctggtattgcttgccctagcacaatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 attataattaatgtacaaatattaatctctggccctggtattgcttgccctagcacaatt 118

                                                                       
Query: 484 taatgtagttattctgagtgattatccatccattgacagtattgccttgatagtgcattt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 taatgtagttattctgagtgattatccatccattgacagtattgccttgatagtgcattt 58

                                                                    
Query: 544 atagtttaaattctttttgcaatataagtcaatctgtatttacccacatcagtgtga 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  atagtttaaattctttttgcaatataagtcaatctgtatttacccacatcagtgtga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no266_k02.g1 MSMg01no266_k02.g1 CHROMAT_FILE:
MSMg01no266_k02.g1 PHD_FILE: MSMg01no266_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:28 2005
         (658 letters)



>mm_chr4_76783252_76784309
          Length = 1058

 Score =  665 bits (344), Expect = 0.0
 Identities = 359/364 (98%)
 Strand = Plus / Plus

                                                                       
Query: 295 actctttgcttacaataataagcctatttccactagcaaaatgcagaagagaagatgtga 354
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 495 actctttgcttaaaataataagcctatttcctctagcaaaatgcagaagagaagatgtga 554

                                                                       
Query: 355 tatccagcagagaaagagtaaatctagaaaagtcaggtgtgtgaaattcactaccaagaa 414
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 555 tatccagcagagaaagagtaaatctagaaaagtcaggcgtgtgaaattcactaccaagaa 614

                                                                       
Query: 415 gccaaggaagtcagacaaatgagactgtggtgaggggtaatcagccatgtggcagagctt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gccaaggaagtcagacaaatgagactgtggtgaggggtaatcagccatgtggcagagctt 674

                                                                       
Query: 475 agattagtataaacgggataattgagttatgagctagttaagaacaagcctagcttaaaa 534
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agatcagtataaatgggataattgagttatgagctagttaagaacaagcctagcttaaaa 734

                                                                       
Query: 535 tattaaataaaatctatttaacagcctaaaagcttatatttacttaatactttaaactta 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tattaaataaaatctatttaacagcctaaaagcttatatttacttaatactttaaactta 794

                                                                       
Query: 595 ttagagaaatataagtttgtgtcattattaagtactgggtgagcatagaaaggcctatgt 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttagagaaatataagtttgtgtcattattaagtactgggtgagcatagaaaggcctatgt 854

               
Query: 655 ttac 658
           ||||
Sbjct: 855 ttac 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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