Query= MSMg01no266_l03.b1 MSMg01no266_l03.b1 CHROMAT_FILE:
MSMg01no266_l03.b1 PHD_FILE: MSMg01no266_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:33 2005
(320 letters)
>mm_chr4_142683722_142684441
Length = 720
Score = 551 bits (285), Expect = e-161
Identities = 314/335 (93%), Gaps = 18/335 (5%)
Strand = Plus / Plus
Query: 4 ggaattccagcctgtttgtcatggattctgtgcagtttgtcatggcatcccacagactac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagcctgtttgtcatggattctgtgcagtttgtcatggcatcccacagactac 263
Query: 64 agggtccagggtaaatgctgtccaacaaagcatcagaagtggatgctgaggtaagaagga 123
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 264 agggtccagggtaaatgttgtccaacaaagcatcagaagtggatgttgaggtaagaagga 323
Query: 124 actggctggaccatctggcaaagcagatgtttaaacactcaggagctgatgtatgtgtcc 183
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 324 actggctggaccatctggcaaagcagctgtttaaacactcaggagctgatgtatgtgtcc 383
Query: 184 tgttgtaacaggacagggtgaggagaaacaggaggcttagagacaaggaaaagcatcctg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgttgtaacaggacagggtgaggagaaacaggaggcttagagacaaggaaaagcatcctg 443
Query: 244 tttgtagggacaagagcagggattttagtggtggcagcaattcatatat----------- 292
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttgtagggacaagagcagggattttagtggtggcagcaattcatatatatatatatata 503
Query: 293 -------gtgtgtgtgtgtgtgtgtgtgtgtgtgt 320
||||||||||||||||||||||||||||
Sbjct: 504 tatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgt 538
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no266_l03.g1 MSMg01no266_l03.g1 CHROMAT_FILE:
MSMg01no266_l03.g1 PHD_FILE: MSMg01no266_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:33 2005
(292 letters)
>mm_chr4_142850939_142851630
Length = 692
Score = 534 bits (276), Expect = e-156
Identities = 288/292 (98%)
Strand = Plus / Minus
Query: 1 agcagcgctgctctttccttggcggcccggagagactttcgcctccataggtgtctggct 60
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 492 agcagcgctgctctttccttggctgcccggagagacttttgcctccataggtgtctggct 433
Query: 61 gttgctggtgttccttggcctatggcggtattgctccattctccaatctgccttacactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gttgctggtgttccttggcctatggcggtattgctccattctccaatctgccttacactg 373
Query: 121 atctcttcctattccctgtgtgcttgtgtatatatccctaggctcctccacatcgacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atctcttcctattccctgtgtgcttgtgtatatatccctaggctcctccacatcgacttt 313
Query: 181 cctggaatgcaggtgcctgcactaagggcccacttagataacccgggctaagctctttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cctggaatgcaggtgcctgcactaagggcccacttagataacccgggctaagctctttct 253
Query: 241 tgccaggaatcttaattggggctgtaaggtggactcagcagggaaagtgctt 292
|||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 252 cgccaggaatcttaattggggctgtaaggtggactcaacagggaaagtgctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
