BAC Information

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BAC

Clone NameMSMg01-266L07
Chromosome4 (Build37)
Map Location 142,684,013 - 142,684,128
singlet/doubletsinglet
Overlap genenone
Upstream gene9030409G11Rik, EG665983, LOC546484, 6330411D24Rik
Downstream genePrdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266L07.T7 (MSMg01no266_l07.b1)MSMg01-266L07.TJ (MSMg01no266_l07.g1)
ACCAG407619AG407620
length751948
length of high quality
(start - end)
116 (113 - 228)---
definitionCHROMAT_FILE: MSMg01no266_l07.b1 PHD_FILE: MSMg01no266_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:34 2005CHROMAT_FILE: MSMg01no266_l07.g1 PHD_FILE: MSMg01no266_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTACCATATTGCAGAGGATCCGCGGAATTCCAGCCTGTTTGCCATGGAT
TCTGTGCAGTTTGTCATGGCATCCCACAGACTACAGGGTCCAGGTTTTTC
CCCGACAAACAAAGCATCAGAAGTGGATGCTGAGGTAAGAAGGAACTGGC
TGGACCATCTGGCAAAGCAGATGTTTAAACACTCATGAGCTGATGTATGT
GTCCTGTTGTAACAGGACAGGGTGAGGAGAAACAGGATGCTTACAGACAA
GGAAAAGCATCCTGTTTGTAGGGACAAGAGCAGGGACTTTACTGGTGTCT
TCTTTTCATATATGTGTGCGTGTGTGCGTGTGTGTGTGTTAGTTTGCTTC
CCCCACCCCCCGCTTTTGCACTGTTTTTTATGTACCCTATAAGAGTGTTT
TGAAAACAAATAAAAAAGTTCTTGAGTCCCCGCGCGTTCCGCTGACCACT
CACCTTGTTACCTCTTGCAATAATTACCCTTCGCTCCCTATTTCCTGTCC
CCCCCCCTCCTTCCCCGCTGTATGTCTTTCCTTCTCGCTAGTTCTTTCTC
TCATCCTTTCCCCCTCGCTCTCCTTTTTTCTCTTATTTATTTCTCTCTTC
TTTCTTCCCCCCACCCTTTTCATCTTTTCTTTTCCCCCTCCCCCCTCTTG
TTTCCTTCCTGTTTTCCCTTTCCTTTCACCGCATTCCCATCCCCCCCTCT
TCTTCCCTAATTTTTACACCCCTTATTTTCTCCTTCCCACCTCTTTCCCA
G
GGGGCGTTGAGTTTATTTTGTGGGGACCNCCCNNTCCCCCCCNCGGNNCT
TTCCCCTGTATGATAGTGAGTAGGCCTGGNGGNAGNCCGGCTTTGCGCAT
CAGCANNGANNNANNGNNCGGNGTGGCAAACATAGGGGGGGNNGNNNGNN
NNNNNNNNNNGGNNGGNNNNGGAGAGANNNNNNGNNNTTGNTCCCCAGAA
AAGGGGAGGNGNNNGGNGNNNNNNNNGGNNNANNGGNNGGNANGGNNNNG
ANNGGGNNAANNNGGGNNNNANAGGGGANNNNANANANANNNNNNGGGGG
GGNNGGNGGNANANNANNNNNNNAGGNNGNGNNNNAGAGAGGANNGGTTT
ATTGGAAAGGNGAGGGGGNAGGNNANNAAGGGGNANANNNANAGANAGAN
NGGGGGNNNAAGNNANNNNNNNNGGGGAGTTTTTTTTTATATTGGGGNGN
GNAAGGNAGGGAAANNAGNAGGGGGAAAGTTGTTTTGTTTCCGCCCCCCC
CCGCGCGGCCTTGATGTTTGATTTCTCGGGAANCTCAGGGGATAGGTTGG
GAGAGAGAGATAAAAGAAGAATAATTTCGAGGGCGATGGGGGTTCCATGA
AGCCAGAGACTCGACGAGAGTCTCCGTAGGTAGAGTTGAGCAGGGGAGTT
ACGCGTAGGTTGTGTGGTTTTAGCTTCTACGGTCCTTGATGAAACGCCTG
GGCTCTGATCTTATAGGGGTGAAGGCGCTCTAATGCGCTTGATAGGCTGG
GCGTTTTGTTCCTGCTGTAGGTGTTTTGTTGCACTGAGTGAAGGGCACAT
GGCGAGAAGGTGATTATCGTTCGTGTACTGCATTGTGGGCGCGTTTTTTG
TGTTGTTTGTTTNCGAGGCGCGTGGCTGTCGTTTCTATAAAGGAGTGCGC
GGGGGCGCGTCAGAGGTACTGTTGGNGATTGGGCGAAGGGAACAGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_l07.b1 MSMg01no266_l07.b1 CHROMAT_FILE:
MSMg01no266_l07.b1 PHD_FILE: MSMg01no266_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:34 2005
         (116 letters)



>mm_chr4_142683813_142684328
          Length = 516

 Score =  201 bits (104), Expect = 1e-56
 Identities = 113/116 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatcagaagtggatgctgaggtaagaaggaactggctggaccatctggcaaagcagat 60
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 agcatcagaagtggatgttgaggtaagaaggaactggctggaccatctggcaaagcagct 260

                                                                   
Query: 61  gtttaaacactcatgagctgatgtatgtgtcctgttgtaacaggacagggtgagga 116
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttaaacactcaggagctgatgtatgtgtcctgttgtaacaggacagggtgagga 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)