BAC Information

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BAC

Clone NameMSMg01-268A04
Chromosome4 (Build37)
Map Location 20,630,065 - 20,630,421
singlet/doubletsinglet
Overlap geneE130310K16Rik
Upstream geneWwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genePrdm13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268A04.T7 (MSMg01no268_a04.b1)MSMg01-268A04.TJ (MSMg01no268_a04.g1)
ACCAG408573AG408574
length727722
length of high quality
(start - end)
629 (45 - 673)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no268_a04.b1 PHD_FILE: MSMg01no268_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:13 2005CHROMAT_FILE: MSMg01no268_a04.g1 PHD_FILE: MSMg01no268_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTAGGAAAAACAGCTTTAAGAGCTGTTACGCAATAAAGCCCTGTT
CCTGCTATGGCTGATAGTCCTATTATGATTCACATGAAATGATCAAGCTG
GAAAGGCAATCAAAGATAATAAGGAAAGGGGATATATAATAATTTTTTAC
AGAATTTTGCAAGGTATGAGAACGTCCTAATAGTTGCAAAGTAGCAAGTT
AGCTTGTCATAGTTTCATAACTACTGATAGAAGACTCCTGGGTAAGAGGT
GAAAGAGAGTTCACTGCTTATTGGGATTTTAGTGGCCACTTTGTTGGCAT
TTAATCACCTGCCTCTAACTCACAGCTCCTACAGGAGATAAGAATGGCAC
AGGCATATGGTATATGCAGATGCAGTGGTACACTGAAGAGCTCCTGAACT
TGGGTCTTTTTTTCATAGGCAAAAAAAGGCATGCCTGTCACTTCCTCTGC
TGGGTGAGAGATCTTTATTATGCTTGAGATGAAACATGCCAGCCCTTTTC
TCTAGAGAGCTACCGACTTTGTCTTTCAAGGCTCTTTAAACATCTTAGAA
AACAGAAGCAAAGGGTAATGTTACCTCACTGCCAAGAGTTATAGCGTAGG
AGATGTCTACAGAGCATCCTCTCAGTGGAATGGAATCACTTGTGGAAGGC
ATTGGAAGGCAAGGGCTCTTTCAGATT
TGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGTAGAACTTAGAAGTTTTGGCA
GAAAAGACTTTGAGAGTAAGAGCATTATTGTGGCATTAGAGTAGGAGGAG
AGAGTAAGATAGAGGAGAATGTAGAGTGGAACAACTTAGAAACTATAGAT
AATATTTTAAAAAACTAAGAGAGCAATAAACAGAATGCACAGGGAAAGAG
AAAAAAAAGAAGCTGCAGAGAGAGCAGGAGAGGCAGGCAGGCTTCTCCTT
ACCATGGGACAGAAGAGGTTTCTCTTAATAACAAGGCAGCCTTAATCTTA
TTAAAGGAACAAAGCATTCTTCTTACAAACTCGGCTTAGTTCATTTAGCA
TTAAAAGGGTAGAAGCCTTTTCTTTCTCTATGCAATAAAGATTGGAGTTC
AGTTTTCATCCAGAATGAGTCAGTTCTTTCTGCACTGGTGCTTGGTCTTT
TGCTCCAAATGCATATGTAAGTATAGGTGTGTGTGTGTGTGTGTGTGTGT
GTGTNTNNNNNTNNTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTGTTTTN
TTTTTTTTTTTTTTTTTTNTTTTTTTTTATTTTNTTTTTTNNTTTTTTTT
TTTTTTTATTTTTTTTTTTTCTTATTTTCGTTCGGTCGTTTNTTNTTCGG
TTTATTTTATTTTTATTATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_a04.b1 MSMg01no268_a04.b1 CHROMAT_FILE:
MSMg01no268_a04.b1 PHD_FILE: MSMg01no268_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:13 2005
         (629 letters)



>mm_chr4_20630065_20631094
          Length = 1030

 Score =  667 bits (345), Expect = 0.0
 Identities = 354/357 (99%), Gaps = 1/357 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattag-gaaaaacagctttaagagctgttacgcaataaagccctgttcctgct 62
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ggaattcattagaaaaaaacagctttaagagctgttacgcaataaagccctgttcctgct 298

                                                                       
Query: 63  atggctgatagtcctattatgattcacatgaaatgatcaagctggaaaggcaatcaaaga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 atggctgatagtcctattatgattcacatgaaatgatcaagctggaaaggcaatcaaaga 238

                                                                       
Query: 123 taataaggaaaggggatatataataattttttacagaattttgcaaggtatgagaacgtc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 taataaggaaaggggatatataataattttttacagaattttgcaaggtatgagaacgtc 178

                                                                       
Query: 183 ctaatagttgcaaagtagcaagttagcttgtcatagtttcataactactgatagaagact 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ctaatagttgcaaagtagcaagttagcttgtcatagtttcataactactgatagaagact 118

                                                                       
Query: 243 cctgggtaagaggtgaaagagagttcactgcttattgggattttagtggccactttgttg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 cctgggtaagaggtgaaagagagttcactgcttattgggattttagtggccactttgttg 58

                                                                    
Query: 303 gcatttaatcacctgcctctaactcacagctcctacaggagataagaatggcacagg 359
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 57  gcatttaatcacctgcctctaactcacagctcctagaggagataagaatggcacagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space:   631380
Effective search space used:   631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)