BAC Information

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BAC

Clone NameMSMg01-268J09
Chromosome4 (Build37)
Map Location 6,342,881 - 6,343,155
singlet/doubletsinglet
Overlap geneNsmaf
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp
Downstream geneLOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268J09.T7 (MSMg01no268_j09.b1)MSMg01-268J09.TJ (MSMg01no268_j09.g1)
ACCAG408961AG408962
length706709
length of high quality
(start - end)
297 (61 - 357)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no268_j09.b1 PHD_FILE: MSMg01no268_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:53 2005CHROMAT_FILE: MSMg01no268_j09.g1 PHD_FILE: MSMg01no268_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAACTGCTTTGCTTTTTAACTTGGATCTCATCTCTTCTCTT
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT
CTCTTCTCTTCTCTTCTCTCTTTCTCTCTTTCTCTTTTAACAATTTTCTA
TTAACATGTGGCAAGTGTATATAGAGGATCTCCTCTCTCCAGGCCCCCGT
GGCTGCTGAGATAAACTTTAAGAAAGGAGGGTCCATGCACCTCCATCCAC
ATAACCACGTTCTTATCTCATATAGCCTCCCAGGAGGAGCCACGTGATGT
CCCATATTTTNCTANCTGCACTGCCTTTCCTTTCCTTCCAGTTTTGTCTC
ATGACACCCAGGCATGCTGACAAAATAAAAAAAGATGCTACTAGAATAGC
TAAGCCCCCTCTCCAGCCCCGCCCGACCTGTGAGGGCTTGAGAAGGACAG
CCTAACGTGCCATGTGAAGACATCCAGGGTAGTCAGGTTACTGTCCTCTT
CCCTTAGTCACCAACCCTAGCCACCATCGTATGACCACGTGAGACAGGGT
AAATACTCCAGCTTCTCTTCATGCTAAAGTGAGAGTGCTACTGCTCCCCT
TGAGGAACGAGAACCCATCTTTGAGTTCTCGATTTCTTTTCCTTTCTCAA
AACAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTTTAATCCATTTTT
AAATAGGGTTATTTGGTTTTCTGGAGTCAAACTTCACATGAAATTCAAGA
AGGAAGACAAAAGTGTGGGTACTTCGCTCCTTCATAGAAGGGGGAACAAA
ATACCCATAGGAGGAGTTACAGAGACAAAATGTGGAGCAGAGACTGAAGG
AAAGGCCATCCAGAGACTGCCCCACCTGGGGATCCATCCCATATATAGTC
ACCAAACCCAGACGTTATTGCGGATGCCAACAGGTATTTGCTGACAGGAG
CCTGATATAGCTGTTTTCTGAGCGGCTCCACCAGTGCTTGACAAATATTG
AGGTGGATGCTCTCAGCCAACCATTGGACTGAGCACAGGGTCCCCAATGA
AGGAGCTAGAGAAAGAGCTCAAGGAGCTGAAGAGGTTTGCAGATCAAGAG
AAGGAACAACAATATGAAACAAACAGTACCCCCAGAACTCAGGGACTAAA
CCACCAACCAAAGAGTACACATGGTGGGACTCATGGCTCTAGCTGCATTT
GTAGCAGAGGATGTCCTAGTTGGTCATCAATGGGAGGAGAGGCCCTTGGT
CCTGTGAAGGCTCTATGCCCCAGTGGAGGGGAAAGCCAGGGCCAGAAGTG
GAAGTGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_j09.b1 MSMg01no268_j09.b1 CHROMAT_FILE:
MSMg01no268_j09.b1 PHD_FILE: MSMg01no268_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:53 2005
         (297 letters)



>mm_chr4_6342555_6343252
          Length = 698

 Score =  458 bits (237), Expect = e-133
 Identities = 273/295 (92%), Gaps = 21/295 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgctttgctttttaacttggatctcatctcttctcttctcttctcttctcttctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aactgctttgctttttaacttggatctcatctcttctcttctcttctcttctcttctctt 542

                                                                       
Query: 61  ctcttctcttctcttctcttctcttctcttctcttctcttctcttctctctttctctctt 120
           ||||||||||||||||||||||||||||         |||   |||||    |||| |  
Sbjct: 541 ctcttctcttctcttctcttctcttctc---------ctt---ttctc----tctc-c-- 501

                                                                       
Query: 121 tctcttttaacaattttctattaacatgtggcaagtgtatatagaggatctcctctctcc 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 -ctcttttaacaattttctattaacatgtggcaagtgtatatagaggatctcctctctcc 442

                                                                       
Query: 181 aggcccccgtggctgctgagataaactttaagaaagga-gggtccatgcacctccatcca 239
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 aggcccccgtggctgctgagataaactttaagaaaggaggggtccatgcacctccatcca 382

                                                                  
Query: 240 cataaccacgttcttatctcatatagcctcccaggaggagccacgtgatgtccca 294
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 cataaccacgttcttatctcatagagcctcccaggaggagccacgtgatgtccca 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 698
Length adjustment: 9
Effective length of query: 288
Effective length of database: 689
Effective search space:   198432
Effective search space used:   198432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)