BAC Information

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BAC

Clone NameMSMg01-268P12
Chromosome4 (Build37)
Map Location 26,559,150 - 26,559,492
singlet/doubletsinglet
Overlap genenone
Upstream geneFut9, LOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268P12.T7 (MSMg01no268_p12.b1)MSMg01-268P12.TJ (MSMg01no268_p12.g1)
ACCAG409230AG409231
length730732
length of high quality
(start - end)
234 (126 - 359)343 (383 - 725)
definitionCHROMAT_FILE: MSMg01no268_p12.b1 PHD_FILE: MSMg01no268_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:20 2005CHROMAT_FILE: MSMg01no268_p12.g1 PHD_FILE: MSMg01no268_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGACCTGTCATTGTTCCTGTCTAAAAGAATTACAGGGACAAAAAT
GGAGAAGAGACTGAGGGATAAGACCTCCAGTGACTAGCCCAACTTGTGAT
CCATCTCAAGGGGAGACTCCAAGGCTTGACTCTATTACTGATGCTATGGT
GTGCTTACAGACAGGAGCCTAGCATGGTTGCCCTTCAAGAGGCCCAACTT
GCAGCTGACTGAGACAGATGCAGATACTTACACCCAACCAATGGAATGAA
ATCAAGGATTCCTGTGATTGAATTACGGAAAGGGTGGAAGAATTTGAAGA
GGAGGGTGATTTTTTATGAAGACTAGCACTCTCAACTAACTGGGACCCTA
GAGATCTCTTAAACTCTGAGCCTCCCACCAAAAAGTATACACTAGCAGAT
CTGAGATCCCTTACACGTATACACAGAAGACTGTGTGGTCTGGCCTCACT
AAACAACTTACCCTGGAGAGACTTGAGGTCCCAGGTAGTAGAGAAGCTTA
GCAGGGGGTGAGGTGGGGGGCAGGTGGAAGAAGGAATAGGATGAGGNNTT
GNGNNNTGACGTTNNTATNNTTNTTTTTTGATTATATACCAGGTATTCCC
TTCTTAAAACCCCTCCTGCTTTCCCCTCTTCCCCCCCCTTCCTTTTTCTT
ATTCTTTTCTCTCTTCTTCTTATATTGTTT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGTTTACCGCTATATCTCATGTTTT
TGGGATGTTTGGTTTTTTGCAGGTAGGCCTTTTGAGTTCTTTATATATTT
TGGATATTAGCCCTCTCTCAGATGTGCTAATATCTGGAGTTTTTTCCAAA
CCTGTAAGTTGCTGATTTGTACTATTTATTATCTTCTTTGTGTTACAGAA
GCTTTTCAGTTTTATGAGGTCCCAGCATTTCTAATGTCCACGCAATGCAT
TTTTAAAGACCCTCATGAATAGAACAAAAAAATGTGGATGTTCAAAGAAC
ATTCTTATATTTTTTTTAACATGCCCCTCCCCACCAAGGTTCATAAATAA
GCCCGAATAATTTTGTGCAAAAATCTTAAAACTAACTTCTTTAAGATTTT
GTCTAGCAAGTTCTTGTTTCTTCCACTATTTGAATTGTATACACAAGTGG
GCTCAAGGCTGGAGGAACAAGCCAGTACCAGGTATGAGGAGCCTGAAACC
TTAGATGATAGAGTGGAATAAATCACTTGCTAGAGATCTATCTTCTTCTG
ATAGTAAATAAATTAATGACATACAAGAGAAAACTGAGATTCTTTACAAA
GTGTTTATAGCTGGAGCTCTTATGTCCTTCTGGACAGATCTCTACAAAAT
CATTTCTCAGCCTCTATTTTCATTGTAGTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_p12.g1 MSMg01no268_p12.g1 CHROMAT_FILE:
MSMg01no268_p12.g1 PHD_FILE: MSMg01no268_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:20 2005
         (343 letters)



>mm_chr4_26558950_26559692
          Length = 743

 Score =  640 bits (331), Expect = 0.0
 Identities = 340/343 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaaggttcataaataagcccgaataattttgtgcaaaaatcttaaaactaacttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 accaaggttcataaataagcccgaataattttgtgcaaaaatcttaaaactaacttcttt 484

                                                                       
Query: 61  aagattttgtctagcaagttcttgtttcttccactatttgaattgtatacacaagtgggc 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aagattttgtttagcaagttcttgtttcttccactatttgaattgtatacacaagtgggc 424

                                                                       
Query: 121 tcaaggctggaggaacaagccagtaccaggtatgaggagcctgaaaccttagatgataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcaaggctggaggaacaagccagtaccaggtatgaggagcctgaaaccttagatgataga 364

                                                                       
Query: 181 gtggaataaatcacttgctagagatctatcttcttctgatagtaaataaattaatgacat 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtggaataaatcatttgctagagatctatcttcttctgatagtaaataaattaatgacat 304

                                                                       
Query: 241 acaagagaaaactgagattctttacaaagtgtttatagctggagctcttatgtccttctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 acaagagaaaactgagattctttacaaagtgtttatagctggagctcttatgtccttctg 244

                                                      
Query: 301 gacagatctctacaaaatcatttctcagcctctattttcattg 343
           |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 243 gacagatctctacaaaatcacttctcagcctctattttcattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)