BAC Information

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BAC

Clone NameMSMg01-269J23
Chromosome4 (Build37)
Map Location 82,099,785 - 82,100,023
singlet/doubletsinglet
Overlap geneNfib
Upstream geneLOC100040131, LOC100040144, EG668895, LOC100040164, EG545641
Downstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik, Snapc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269J23.T7 (MSMg01no269_j23.b1)MSMg01-269J23.TJ (MSMg01no269_j23.g1)
ACCAG409690AG409691
length724786
length of high quality
(start - end)
234 (128 - 361)109 (139 - 247)
definitionCHROMAT_FILE: MSMg01no269_j23.b1 PHD_FILE: MSMg01no269_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:07 2005CHROMAT_FILE: MSMg01no269_j23.g1 PHD_FILE: MSMg01no269_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGCGCATTTTACAATAATAGATCCTGAACATTCGTCAGATTGCCAAGG
ATCTGCATTTACCATGTATTTCTCATGCAATTACCATGCATTTCTAAACC
TATAGGTAGCCTTTGAGAATGCAATGTCCTTCTCAAGCATCAGTCTCTGT
CTAAGAACTATCGTTTATTTAGTCCTTTTCAGAGAGAGAGAGAGAGAGAG
AGAGAGAACACACTTGACATGAAACATGCAAGCGTGTGTCTGTGAATATG
GAGGCCAGAGCTCTCTCTACCTTTTTTTAATTTTTATTTATTTATTTATT
TGGAGCCAGGTGCCTTTCTTCCCCCCCCCCCCCCACCAACTGGAGCAGAC
TGGCTGGCTCCCGTACTTTTTACAGAAAAAAAATATCTTTGCATCCATCC
CTAACTGCCTGTGCATGGTGCTGGGGATCAGAGCTCAAGGAGTCATGGAT
ATGAAAATGCTTTGTTGACTGATACATCTCTTCAGTCTTCCCTCCTCATT
TTATTTTTAAACAAAGAATAATGTGAATTGAAATAAAACATGGAGGATGT
CATTGCTTCTGGCTTTCTATGTGGCAGTGAGTGGGGAGGGAACCAAATGC
TCTCTGAGAGTGAGGTGGTCAGGGTTTCTACTCCTAAGAGAGTCTCCACA
GTCATGTGTGCTGAGTCACAGCTT
TTACAATGGGTANNCCTGGGGNCCGCCTGGCTTCCCAAAACTAGGNNGAA
CNANANAAGGATTTCCGAAAAACNCNCNGCAAAGGNCCCACACAGGCGGC
GGGNAAAGGGNGNNNNATTAAGCCCCCNGAATCTTGNNGGAGGAAAAAGN
CTACAAGNNCAGGAAGCCACCCCCATTATTCANGATTCCTTTCCCAGAAC
TGCTTCCTGCCTGGCTCCCTCCATCAAATATGCCTCTGCAGCANCCAAAG
TCAACCTTTATTGCTTAGCCTGAAATNTTCCTTTTTTAACTCTTTCATGC
CAATGGNCATGGNNNAGCCCAATTTTTTTTTTCTACANANNAAAACCANN
GCAAAAAAAAAAAATTTTGGTGGAACCCAAAACAAAACCCCCATTGTTTT
TTTTTTTTTTNNNNNNGGTTTTTTTTGTTNNAAAAAAAAAATTTTTAAAA
AAGNNGGNTTTTGTTNNNGGGNNGGGNNTTGTTTTATTTNTNNNNNNNNN
TTTTTNNNTTTTTTGGGGGGANATAAGGGGGGGGAACCTAAAAAANNNNN
NNNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
ATACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGGGGGGGGGGGGGGGGAGAGCTANGGANNNNNNNANAA
NNNANANANAAGAGAGGGGGGTGTGTTTTTCCTNNTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGGGGGGNGGGTGGGGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_j23.b1 MSMg01no269_j23.b1 CHROMAT_FILE:
MSMg01no269_j23.b1 PHD_FILE: MSMg01no269_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:07 2005
         (234 letters)



>mm_chr4_82099721_82100354
          Length = 634

 Score =  435 bits (225), Expect = e-126
 Identities = 233/239 (97%), Gaps = 6/239 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caattaccatgcatttctaaacctataggtagcctttgagaatgcaatgtccttctcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 caattaccatgcatttctaaacctataggtagcctttgagaatgcaatgtccttctcaag 244

                                                                       
Query: 61  catcagtctctgtctaagaactatcgtttatttagtccttttc------agagagagaga 114
           |||||||||||||||||||||||||||||||||||||||||||      |||||||||||
Sbjct: 243 catcagtctctgtctaagaactatcgtttatttagtccttttcagagagagagagagaga 184

                                                                       
Query: 115 gagagagagagagagaacacacttgacatgaaacatgcaagcgtgtgtctgtgaatatgg 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gagagagagagagagaacacacttgacatgaaacatgcaagcgtgtgtctgtgaatatgg 124

                                                                      
Query: 175 aggccagagctctctctacctttttttaatttttatttatttatttatttggagccagg 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 aggccagagctctctctacctttttttaatttttatttatttatttatttggagccagg 65


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)