BAC Information

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BAC

Clone NameMSMg01-269L01
Chromosome4 (Build37)
Map Location 22,894,216 - 22,894,501
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040379, Fbxl4, Pou3f2, LOC664911, 1700025O08Rik
Downstream geneLOC625462, LOC383998, LOC100040464, LOC623873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269L01.T7 (MSMg01no269_l01.b1)MSMg01-269L01.TJ (MSMg01no269_l01.g1)
ACCAG409739AG409740
length725725
length of high quality
(start - end)
639 (45 - 683)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no269_l01.b1 PHD_FILE: MSMg01no269_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:12 2005CHROMAT_FILE: MSMg01no269_l01.g1 PHD_FILE: MSMg01no269_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGATGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCAG
ATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGT
TCATAGCAGCCGTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATTGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGA
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTA
GGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGAA
GAATGAAGACTGATGCGTGNACACT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTGGTACAGCGACACAGCAAGAG
TGACACACTGTTTTAGAACTTGCCAGAGCTCCACTAATGCCAGGAATAGG
TAGGAATATGACAGTGTCTAGAAAGGGGCCTCGGGTGAGGAACTGCGTAC
TTAGATATCAGTAGTACTTTGTGCTATTTTCCAGTGTTTACTTAGAGTAT
TGCTTAGAACAACCCAGTTGTTTAAGGGAGCCCCAACTGAGTTACCCATG
CTCTCATTGCTCTGCTTCAATGGAAACTAAACAACTGGAAAAAGCTGAAG
GGAAACCTTATCTTTGATGTCACCCTCATGCAGACACTGGCAGGAGCTGA
TGGAAGTCATGGTCCTGACAGTTGTTTTCCTGTACCATTTAGGATGATGA
CTTCATGCCTTAAAAAAAATAACTGCATTGAGTTCTGCTACTAGGAATAA
TAATGGCCACTTGCAGAACCCTCTGAACCCTGAAAAACAGAAGCTCAGAG
AAAATCACAGAGAAAACCAAAACAGTGTATGATATACAAAACAAACAAAC
AAAATAATTCACAGTTCTGAGTTCAAAAGTGAGGGGTATCTGAGTGTAGG
GTTATCTTATCCATCCTATGTCTTGTATATCTGACTCAGCTACAGCACAG
CACNAAGAGGCATAAAGTAACCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_l01.g1 MSMg01no269_l01.g1 CHROMAT_FILE:
MSMg01no269_l01.g1 PHD_FILE: MSMg01no269_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:12 2005
         (286 letters)



>mm_chr4_22894016_22894701
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttggtacagcgacacagcaagagtgacacactgttttagaacttgccagagctccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 acttggtacagcgacacagcaagagtgacacactgttttagaacttgccagagctccact 427

                                                                       
Query: 61  aatgccaggaataggtaggaatatgacagtgtctagaaaggggcctcgggtgaggaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aatgccaggaataggtaggaatatgacagtgtctagaaaggggcctcgggtgaggaactg 367

                                                                       
Query: 121 cgtacttagatatcagtagtactttgtgctattttccagtgtttacttagagtattgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgtacttagatatcagtagtactttgtgctattttccagtgtttacttagagtattgctt 307

                                                                       
Query: 181 agaacaacccagttgtttaagggagccccaactgagttacccatgctctcattgctctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agaacaacccagttgtttaagggagccccaactgagttacccatgctctcattgctctgc 247

                                                         
Query: 241 ttcaatggaaactaaacaactggaaaaagctgaagggaaaccttat 286
           ||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 246 ttcaatgtaaactaaacaactgaaaaaagctgaagggaaaccttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)