BAC Information

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BAC

Clone NameMSMg01-270F11
Chromosome4 (Build37)
Map Location 128,761,759 - 128,910,351
singlet/doubletdoublet
Overlap geneIbrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080
Upstream gene4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2
Downstream geneSync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270F11.T7 (MSMg01no270_f11.b1)MSMg01-270F11.TJ (MSMg01no270_f11.g1)
ACCAG410204AG410205
length727743
length of high quality
(start - end)		588 (41 - 628)664 (71 - 734)
definitionCHROMAT_FILE: MSMg01no270_f11.b1 PHD_FILE: MSMg01no270_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:58 2005CHROMAT_FILE: MSMg01no270_f11.g1 PHD_FILE: MSMg01no270_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,909,787 - 128,910,351)(128,761,759 - 128,762,420)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCTGGCCTAAAGGGGTTACTATGTCATTGTTGGGGCAAATGCTGACCTGG
AAACTCCTTAGTTTATGCTACTGAGTCCTCCCTGCCTTACAGCCTGTCCC
CCTAGGGCAGGCACCCCCTGGGATGGGATCCTCCCCTCTGCTCCAGGCAC
TCCCGGCCTGCCCCCCCAATATTTACATTAGAACCTGCCTGGCCTGTCAG
CTCTGCCTCTGTTGAGGTGGGGCTGGACATGGGGAGAAAGGAAGTAGATT
TCTCATCTTCAGGGTGGGGTGAACCTTTTTTTGGTCAGGGAGGGGCGGAG
GCTCCCTCTACCTTTACCCATTAACAGAGTTGGGACAGCCCTGTGATTTT
ATGTGAGATCCAGATTTAAATGGGGACCCGATACTTCCTGGTTGGGTGAC
CTTCAGCAAGTGAAGTCTCTTTCCCCTGAGTCTCCTCATTCTCCTTTGTA
AGAAAGCAGACTTCACCTTGCCCGTGGGCACCTCCTTCTGAGTTAGTGAT
GCTCCGTGCGTCCCTCTGTTGTCTTGCTTTTACAGAAAGAGCAGCTACTG
ACACGTCCGTCTGTCCGTCCATTCTGCCTCTGCCGTGTAGAAGCCTTCTT
TCACCCCCTCTTCATCTTGTTTATTTGAATAAAGTGGAGTTGATACCAGA
GTCTCTAACACCCCTGGATCCTGGATG

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTCATAACTGACCTCATGTCACTGTCCTT
GGCTTGGGTAGTCCTGCAGAGCCAAGTGTTTATTGGAAGAGTAGTCTGTC
TGTCTGTGAGAGGCCTGCGGGTTTCTAACCCCAGGGAAGAAGGGTTTTAC
TCCCTCCAACTGCAGTGGAGTCGCTTGTAGAGCAGCTGCTCCTCCCATAC
AGGAAGCCAAGGCAGGCTTGCTGTAGACTGGAGTCAGGCTGAGTCTGCAA
TAGCGAGGAGACCGAGTTGCACCTTTTTTGCCCTCGAGAGGCAGTTCTGC
AGTTTTCCTGTCAGAGCCAGATTCATACTCACCACACTCTATAGTCAGTG
TTTAGGGGCAGAGTCTGTGGAGAGGGCTTGGTGACCCCGCAGGGTTACAG
TTAGGAAGCAACTGGGGCTGAAACCCAGATCCCTGTGCATACTGTGTAGA
GCTGCTCTACCCCTGAGCCGCATCCCAGCCTAGGAGCCAAGCCTATGGGA
GCAAGAGCTGTTTCTGCAAGATCCCAGGCAATAGCTAGCATAGATGTTGG
CTGTGCTCTCAGGTGCACGCTCCCTGCCAGCCTAGTTAGAGAGAGGCTGA
GAAATGCGGCCTCCAGGGAAAGCAGCGGGCAGGCGTGCCGCCCAAGTCTC
CCTTGAGCTTACACGGTTAGCAGGAGTGAGCTGTTAGTACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_f11.b1 MSMg01no270_f11.b1 CHROMAT_FILE:
MSMg01no270_f11.b1 PHD_FILE: MSMg01no270_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:58 2005
         (588 letters)



>mm_chr4_128909787_128910774
          Length = 988

 Score = 1017 bits (526), Expect = 0.0
 Identities = 556/566 (98%), Gaps = 2/566 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctggcctaaaggggttactatgtcattgttggggcaaatgctgacctggaaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaattccctggcctaaaggggttactatgtcattgttggggcaaatgctgacctggaaac 506

                                                                       
Query: 65  tccttagtttatgctactgagtcctccctgccttacagcctgtccccctagggcaggcac 124
           ||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccttaggttatggtactgattcctccctgccttacagcctgtccccctagggcaggcac 446

                                                                       
Query: 125 cccctgggatgggatcctcccctctgctccaggc-actcccggcctgcccccccaatatt 183
           |||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||
Sbjct: 445 cccctgggatgggatcctcccctccgctccaggcga-tcccggcctgcccccccaatatt 387

                                                                       
Query: 184 tacattagaacctgcctggcctgtcagctctgcctctgttgaggtggggctggacatggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tacattagaacctgcctggcctgtcagctctgcctctgttgaggtggggctggacatggg 327

                                                                       
Query: 244 gagaaaggaagtagatttctcatcttcagggtggggtgaacctttttttggtcagggagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gagaaaggaagtagatttctcatcttcagggtggggtgaacctttttttggtcagggagg 267

                                                                       
Query: 304 ggcggaggctccctctacctttacccattaacagagttgggacagccctgtgattttatg 363
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggcggaggctcccactacctttacccattaacagagttgggacagccctgtgattttatg 207

                                                                       
Query: 364 tgagatccagatttaaatggggacccgatacttcctggttgggtgaccttcagcaagtga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 206 tgagatccagatttaaatggggacccgatacttcctggttgggtgaccttcagcaaggga 147

                                                                       
Query: 424 agtctctttcccctgagtctcctcattctcctttgtaagaaagcagacttcaccttgccc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 agtctctttcccctgagtctcctcattctcctttgtaagaaagcagacttcaccttgccc 87

                                                                       
Query: 484 gtgggcacctccttctgagttagtgatgctccgtgcgtccctctgttgtcttgcttttac 543
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  atgggcacctccttctgagttagtgatgctccgtgcgtccctctgttgtcttgcttttac 27

                                     
Query: 544 agaaagagcagctactgacacgtccg 569
           |||||||||| |||||||||||||||
Sbjct: 26  agaaagagcatctactgacacgtccg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_f11.g1 MSMg01no270_f11.g1 CHROMAT_FILE:
MSMg01no270_f11.g1 PHD_FILE: MSMg01no270_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:58 2005
         (664 letters)



>mm_chr4_128761559_128762620
          Length = 1062

 Score = 1241 bits (642), Expect = 0.0
 Identities = 658/664 (99%), Gaps = 2/664 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcataactgacctcatgtcactgtccttggcttgggtagtcctgcagagccaagtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcataactgacctcatgtcactgtccttggcttgggtagtcctgcagagccaagtgtt 260

                                                                       
Query: 61  tattggaagagtagtctgtctgtctgtgagaggcctgcgggtttctaaccccagggaaga 120
           ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tattggaagagtagtctatctgtctgtgagaggcctgcggttttctaaccccagggaaga 320

                                                                       
Query: 121 agggttttactccctccaactgcagtggagtcgcttgtagagcagctgctcctcccatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 agggttttactccctccaactgcagtggagtcgcttgtagagcagcttctcctcccatac 380

                                                                       
Query: 181 aggaagccaaggcaggcttgctgtagactggagtcaggctgagtctgcaatagcgaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaagccaaggcaggcttgctgtagactggagtcaggctgagtctgcaatagcgaggag 440

                                                                       
Query: 241 accgagttgcaccttttttgccctcgagaggcagttctgcagttttcctgtcagagccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accgagttgcaccttttttgccctcgagaggcagttctgcagttttcctgtcagagccag 500

                                                                       
Query: 301 attcatactcaccacactctatagtcagtgtttaggggcagagtctgtggagagggcttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attcatactcaccacactctatagtcagtgtttaggggcagagtctgtggagagggcttg 560

                                                                       
Query: 361 gtgaccccgcagggttacagttaggaagcaactggggctgaaacccagatccctgtgcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgaccccgcagggttacagttaggaagcaactggggctgaaacccagatccctgtgcat 620

                                                                       
Query: 421 actgtgtagagctgctctacccctgagccgcatcccagcctaggagccaagcctatggga 480
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actgtgtag--ctgctctacccctgagccgcatcccagcctaggagccaagcctatggga 678

                                                                       
Query: 481 gcaagagctgtttctgcaagatcccaggcaatagctagcatagatgttggctgtgctctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gcaagagctgtttctgcaagatcccaggcaatagctagcatagatgttggctgtgctctc 738

                                                                       
Query: 541 aggtgcacgctccctgccagcctagttagagagaggctgagaaatgcggcctccagggaa 600
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aggtacacgctccctgccagcctagttagagagaggctgagaaatgcggcctccagggaa 798

                                                                       
Query: 601 agcagcgggcaggcgtgccgcccaagtctcccttgagcttacacggttagcaggagtgag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 agcagcgggcaggcgtgccgcccaagtctcccttgagcttacacggttagcaggagtgag 858

               
Query: 661 ctgt 664
           ||||
Sbjct: 859 ctgt 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1062
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1052
Effective search space:   688008
Effective search space used:   688008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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