Query= MSMg01no271_a03.b1 MSMg01no271_a03.b1 CHROMAT_FILE:
MSMg01no271_a03.b1 PHD_FILE: MSMg01no271_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:48 2005
(640 letters)
>mm_chr4_7459827_7460866
Length = 1040
Score = 1183 bits (612), Expect = 0.0
Identities = 633/640 (98%)
Strand = Plus / Plus
Query: 1 aagataaataagggagttatatattggtgttattactaccctcaaatttaggacagagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 aagataaataagggagttatatattggtgttattactaccctcaaatttaggaaagagga 260
Query: 61 gaaatgtatagagcttttcagacatagtgatagaaaaaatgtgtggtttcagtcatgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatgtatagagcttttcagacatagtgatagaaaaaatgtgtggtttcagtcatgtat 320
Query: 121 atcaacagaaatatagttcttgctataaatcattttataatttctgagagtactggaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaacagaaatatagttcttgctataaatcattttataatttctgagagtactggaaaa 380
Query: 181 ttgcaaaccctgctttctttatatgtcaccaaaatgccataattaagattaagtttctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcaaaccctgctttctttatatgtcaccaaaatgccataattaagattaagtttctgc 440
Query: 241 tagggctggtattattagggcttcatggaagtacttgaggtggagggaaagagggaggga 300
||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagggctgggagtacaagggcttcatggaagtacttgaggtggagggaaagagggaggga 500
Query: 301 agacggagttatggctttatttcactcaaaagcatcaatgccacatgccatgctgtaaca 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacagagttatggctttatttcactcaaaagcatcaatgccacatgccatgctgtaaca 560
Query: 361 atgtagtgtcccatcaagcatcattgttttggcaagattaatcctccaaatactggtgtt 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 atgtagtgtcccatcaagcatcattgtttgggcaagattaatcctccaaatactggtgtt 620
Query: 421 gattctatattggatatttataatttatgctagttatttactacatgaaaatataaatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gattctatattggatatttataatttatgctagttatttactacatgaaaatataaatat 680
Query: 481 ttagcgctgttgtggcatgggtaaatacaagagtttttgtggacaagtgtggaattttgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttagcgctgttgtggcatgggtaaatacaagagtttttgtggacaagtgtggaattttgg 740
Query: 541 ccttattatacttttttctctaggaatcatctaatcttttttcaaactgtggcatgctta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccttattatacttttttctctaggaatcatctaatcttttttcaaactgtggcatgctta 800
Query: 601 cttgttcaataaagataatcacaacctacttcttatagtt 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttgttcaataaagataatcacaacctacttcttatagtt 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_a03.g1 MSMg01no271_a03.g1 CHROMAT_FILE:
MSMg01no271_a03.g1 PHD_FILE: MSMg01no271_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:48 2005
(673 letters)
>mm_chr4_7596528_7597600
Length = 1073
Score = 1232 bits (637), Expect = 0.0
Identities = 664/673 (98%)
Strand = Plus / Minus
Query: 1 cttaggatttattggggagcacactccctctttcactcatgcagcttaggaagggctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 cttaggatttattggggagcacactccctctttcactcatgcagcttaggaagggctcag 814
Query: 61 tgccctgttcaacattagcaaagaatctttgggtatttcccctgaggcttcaggcgtttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tgccctgttcaacattagcaaagaatctttgggtatttcccctgaggcttcaggcgtttg 754
Query: 121 ttgtttggagaaaagactatttcattatactgatgtggaagtgtgtggcttaagaaaaat 180
|||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct: 753 ttgtttggagaaaagactatttcattatactgatgtgggagtatgtggcttgagaaaaat 694
Query: 181 aaaagactgtgatattaataataaaagctcagctttggtaataaaaagaataaaaatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aaaagactgtgatattaataataaaagctcagctttggtaataaaaagaataaaaatgta 634
Query: 241 gtgctttaaaatatgaacaattttgattagcatgactatgtcagaagcgcaaatgtacag 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 633 gtgctttaaaatatgaacaattttgattagcatgtctatgtcagaagcgcaaatgtacag 574
Query: 301 ctgacttcataggataggccattgtcaaaatgtcagtttaataaaccattgggcaaattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ctgacttcataggataggccattgtcaaaatgtcagtttaataaaccattgggcaaattt 514
Query: 361 atctgaagcattattatttatgaagcataagggaattccttgtttatatatcatcaccta 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 513 atctgaagcattattatttatgaagcataagggaattccatgtttatatatcatcaccta 454
Query: 421 catacattgctctctatatgcaaatattgtaatctctgggaaccatttgaaatctgaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 catacattgctctctatatgcaaatattgtaatctctgggaaccatttgaaatctgaaac 394
Query: 481 atttccaagcctgagtaagtgggatacgggatactcaacttgagtgggcctagtgagttt 540
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 393 atttccaagcctgagtaagtgggatatgggatactcaacttgaatgggcctagtgagttt 334
Query: 541 taaatgacatgaagagcatatatgagagaataatatttttcaccaaaatgatctttgaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 taaatgacatgaagagcatatatgagagaataatatttttcaccaaaatgatctttgaaa 274
Query: 601 agactcattcttcccagcgtcttgcaaaagtcacacaaagctgccacacagagttcttaa 660
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggactcactcttcccagcgtcttgcaaaagtcacacaaagctgccacacagagttcttaa 214
Query: 661 aaccagttccatt 673
|||||||||||||
Sbjct: 213 aaccagttccatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
