BAC Information

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BAC

Clone NameMSMg01-272F14
Chromosome4 (Build37)
Map Location 138,387,766 - 138,539,932
singlet/doubletdoublet
Overlap genePla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4
Upstream geneEce1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5
Downstream geneHtr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272F14.T7 (MSMg01no272_f14.b1)MSMg01-272F14.TJ (MSMg01no272_f14.g1)
ACCAG411658AG411659
length756763
length of high quality
(start - end)
294 (62 - 355)248 (67 - 314)
definitionCHROMAT_FILE: MSMg01no272_f14.b1 PHD_FILE: MSMg01no272_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:29 2005CHROMAT_FILE: MSMg01no272_f14.g1 PHD_FILE: MSMg01no272_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,539,642 - 138,539,932)(138,387,766 - 138,388,013)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATT
AGGTATCTGTAAAGACACATAAAGGTCTTTTCTTAGGTCTCAAGTCAGCC
ATAAGTATCCATCCCACCACAAACTAACCAGCTAGTGATTTAAGACGCTT
GTATTGGTGCTTGCTGGCTAGCAGACACCAGGCTGTCTGGTGGGGACGTA
GAGGTGACCATGCCATGACAGAGAGAGACAATGGCTCCCCTCATGGGGAC
TGTAGATAGAGACAGACAGACAATGCCAAGGATTTGCAGCAAAGGAAACC
CCAGTGGTCCTTACCCTTTTCTGGAGAACCAACGTGGGCGTCCCTCTCTG
TGATTTTTTTACCCCCCCCCCCCCTTCAGAGAGTTCTTCAAGGAAATATG
CAAATTGCTCTACAGACTAAACCAGAAAAACCAGCCATGGGTCCAGAGGG
TGTGGAACCTGGAGCAGGGGAAGAAGGGGCAGTCAGCCTGAGCTATGCCC
CTTCACTCACTCAGGAGCCTGTCCCAGCAGAGCAGCAGCCAGCCCCCACT
TAGTGGTCACCGAGTGCCAGGCAGAGCTCAGTCCAGCTCACAGGTGTCCT
TGTGCTTTGGGCTGTGATGATACCTGNGCCCTGGGCTAGCCTTGGCTCCA
CAGGCAGGAGGTCTCTCTCTGTATTGAACTCAGATTGCTGGATCTGGTAG
AGCCACTACTCAGATAATACTTACGGGTGAACCAGTTAATGAGCTTAGGC
TAGACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGGAAAAACAAGACAAGGCCTTGAACAAGAAACC
ATACCACCATCCAAGAGGTAAATGCCCAGAAACTCCTGCCCTTTGGATGT
ATTTGAGTGGTTGTGCAGGTGTGTGTGAGTATGTGTGTGCATATGGACAT
GCCTGTGGATGGGAGCCCCCATCAGGTAAATATGTACAAGACAGCATTCA
TGGACAAGTATGTTGTATGGGCTTATGAGGGTGCTGGGGGAGAATTTGGG
AGCATGTGTATTTACTTTTTATCAGTAGTGGGTTAGAAAGGCATCCTGTG
TATTTAGATTATTCTCTNAACGGNACCCGAGGGNAGCACGCGCGTGTCCA
CGTAATTCATGTAGTGTAAAAAAAAAAAAAAATTGTGTGTGCGTGCATGT
AATCGGCTTGCAAAGAGAATGCGCAGTTTGAGCTGGGGAGGAGACTGTCG
GGAGCAGACTCCACGGGTGGGCTTGCCAAGCCTTGATTCTAACTGGAGGA
CACAGATGGAGTATATAGTGAGGTGAGACTTTGCCTTCAATCCCCATTTC
TGGTGAATGAGCCCTGTCTCTCAGTATGACTGAACTAAAGTGGACGATTT
CCATCATTTCCTGTTTTATTAACCGTTCTTTGAATTCGATAAGTTAAAAG
GGGTGACCTGTGTTAAGTTCTTTTTCGTTATACACTTTTGTTTTCTTTCT
ATTAACTATCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_f14.b1 MSMg01no272_f14.b1 CHROMAT_FILE:
MSMg01no272_f14.b1 PHD_FILE: MSMg01no272_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:29 2005
         (294 letters)



>mm_chr4_138539441_138540134
          Length = 694

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   agacacataaaggtcttttcttaggtctcaagtcagccataagtatccatcccaccacaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agacacataaaggtcttttcttaggtctcaagtcagccataagtatccatcccaccacaa 433

                                                                       
Query: 62  actaaccagctagtgatttaagacgcttgtattggtgcttgctggctagcagacaccagg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 actaaccagctagtgatttaagacgcttgtattggtgcttgctggctagcagacaccagg 373

                                                                       
Query: 122 ctgtctggtggggacgtagaggtgaccatgccatgacagagagagacaatggctcccctc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctgtctggtggggacgtagaggtgaccatgccatgacagagagagacaatggctcccctc 313

                                                                       
Query: 182 atggggactgtagatagagacagacagacaatgccaaggatttgcagcaaaggaaacccc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atggggactgtagatagagacagacagacaatgccaaggatttgcagcaaaggaaacccc 253

                                                              
Query: 242 agtggtccttacccttttctggagaaccaacgtgggcgtccctctctgtga 292
           ||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 252 agtggtccttacccaattctggagaaccaacgtgggcgtccctctctgtga 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no272_f14.g1 MSMg01no272_f14.g1 CHROMAT_FILE:
MSMg01no272_f14.g1 PHD_FILE: MSMg01no272_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:29 2005
         (248 letters)



>mm_chr4_138387566_138388213
          Length = 648

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaaaaacaagacaaggccttgaacaagaaaccataccaccatccaagaggtaaatgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaaaaacaagacaaggccttgaacaagaaaccataccaccatccaagaggtaaatgcc 260

                                                                       
Query: 61  cagaaactcctgccctttggatgtatttgagtggttgtgcaggtgtgtgtgagtatgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaaactcctgccctttggatgtatttgagtggttgtgcaggtgtgtgtgagtatgtgt 320

                                                                       
Query: 121 gtgcatatggacatgcctgtggatgggagcccccatcaggtaaatatgtacaagacagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgcatatggacatgcctgtggatgggagcccccatcaggtaaatatgtacaagacagca 380

                                                                       
Query: 181 ttcatggacaagtatgttgtatgggcttatgagggtgctgggggagaatttgggagcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatggacaagtatgttgtatgggcttatgagggtgctgggggagaatttgggagcatg 440

                   
Query: 241 tgtattta 248
           ||||||||
Sbjct: 441 tgtattta 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)