Query= MSMg01no272_h06.b1 MSMg01no272_h06.b1 CHROMAT_FILE:
MSMg01no272_h06.b1 PHD_FILE: MSMg01no272_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:37 2005
(320 letters)
>mm_chr4_19578707_19579429
Length = 723
Score = 586 bits (303), Expect = e-172
Identities = 311/315 (98%), Gaps = 3/315 (0%)
Strand = Plus / Minus
Query: 9 tcactttgattatgcatcatgatgggctgtggtttggggataatgttttgtgtgggttgg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tcactttgattatgcatcatgatgggctgtggtttggggataatgttttgtgtgggttgg 464
Query: 69 aaagctc---tttttttttttctaatggaatataacagtttaaataatgcaagggtaatc 125
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 463 aaagctcttttttttttttttctaatgaaatataacagtttaaataatgcaagggtaatc 404
Query: 126 tataaagcttaaaaatgactttttccaaaccctgtctactccttgtgtttgaggaaaata 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tataaagcttaaaaatgactttttccaaaccctgtctactccttgtgtttgaggaaaata 344
Query: 186 tttctttcattgcctttccatttcaactctgattgtttatttaaaatttcagtaatttgt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tttctttcattgcctttccatttcaactctgattgtttatttaaaatttcagtaatttgt 284
Query: 246 ttaattcagtctgactctgattcaattctatgtatttctggtcttactcatataattttg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttaattcagtctgactctgattcaattctatgtatttctggtcttactcatataattttg 224
Query: 306 gtattctttacaaac 320
|||||||||||||||
Sbjct: 223 gtattctttacaaac 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 723
Length adjustment: 9
Effective length of query: 311
Effective length of database: 714
Effective search space: 222054
Effective search space used: 222054
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_h06.g1 MSMg01no272_h06.g1 CHROMAT_FILE:
MSMg01no272_h06.g1 PHD_FILE: MSMg01no272_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:37 2005
(293 letters)
>mm_chr4_19459652_19460345
Length = 694
Score = 530 bits (274), Expect = e-155
Identities = 286/290 (98%), Gaps = 1/290 (0%)
Strand = Plus / Plus
Query: 1 atcatgaaaa-aacctgttcttctctttccagactgaagaatcatgaatcattcatccta 59
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatgaaaacaacctgttcttctctttccagactgaagaatcatgaatcattcatccta 260
Query: 60 tgaatggcccatattaggggctgttcttatatgcatgtttctatttcttaaattactgta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaatggcccatattaggggctgttcttatatgcatgtttctatttcttaaattactgta 320
Query: 120 ggataaccactggcttatacatatctattttctctaaagaggagagcactcatcaactca 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggataaccactagcttatacatatctattttctctaaagaggagagcactcatcaactca 380
Query: 180 ctaactaagtcaaacttccatgatgaacctaaatggtccatgaggaagtcataggaaaga 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ctaactaagtcaaacttccatgatgaacctaaatggtccatgaggaagtcataggaaaca 440
Query: 240 gattgggtaaatttcattacagagtcaacctggcattaaaggagttcagc 289
||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gattgggtaaatttcattacagagtcaacctggcattaaaggagtgcagc 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 694
Length adjustment: 9
Effective length of query: 284
Effective length of database: 685
Effective search space: 194540
Effective search space used: 194540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
