Query= MSMg01no272_k11.b1 MSMg01no272_k11.b1 CHROMAT_FILE:
MSMg01no272_k11.b1 PHD_FILE: MSMg01no272_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:51 2005
(288 letters)
>mm_chr4_142139033_142139721
Length = 689
Score = 511 bits (264), Expect = e-149
Identities = 282/288 (97%), Gaps = 1/288 (0%)
Strand = Plus / Plus
Query: 1 agtcaactttacatgggttctgaggcttcaaacttagatcctcagggtggtccacctggc 60
||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 201 agtcaactttacacgggttctgaggctccaaacttagatcctcagggtggtgcacctggc 260
Query: 61 tatatccactgtgccatctgtctagcccttttggtcagattt-aacttcctgcgcaagca 119
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tatatccactgtgccatctgtctagcccttttggtcagattttaacttcctgcgcaagca 320
Query: 120 acaccaccaatgatatgagctttcctgagccagccttctcttctgcacttcaataatgat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaccaccaatgatatgagctttcctgagccagccttctcttctgcacttcaataatgat 380
Query: 180 gtggagaaaatggagcttgttcagaggagaaatgagaggctggggaggaataatgagaaa 239
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggagaaaatgaagcttgttcagaggagaaatgagaggctggggaggaataatgagaaa 440
Query: 240 tgcacctgggtggtagggtaagaactccagggtgcttggctttgagac 287
||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcacctgggtggcagggtaagaactccagggtgcttggctttgagac 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 689
Length adjustment: 9
Effective length of query: 279
Effective length of database: 680
Effective search space: 189720
Effective search space used: 189720
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no272_k11.g1 MSMg01no272_k11.g1 CHROMAT_FILE:
MSMg01no272_k11.g1 PHD_FILE: MSMg01no272_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:51 2005
(291 letters)
>mm_chr4_142324726_142325416
Length = 691
Score = 532 bits (275), Expect = e-155
Identities = 284/287 (98%)
Strand = Plus / Minus
Query: 1 ctaaactaatgatatttcccagcaaaacatggctctcgaggttccccaccaggtagcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctaaactaatgatatttcccagcaaaacatggctctcgaggttccccaccaggtagcaag 428
Query: 61 ctggggaagcaagctcatgctctgtatctttggtttaagatatctttggattaagattta 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctggggaagcaagcccatgctctgtatctttggtttaagatatctttggattaagattta 368
Query: 121 aatctaaaatgtccccctggtagcttgctccccagatagtaaagagccttgagaccctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aatctaaaatgtccccctggtagcttgctccccagatagtaaagagccttgagaccctgt 308
Query: 181 ggaacctgtaggaggtggcatctagacagtgggagcaggtaatatgacagacatcactgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 307 ggaacctgtaggaggtggcatctagacagtgggagcaggtaatatgacagacatcacagg 248
Query: 241 acctctctacccacatcgtcacagccatagtcagctctctcatcctt 287
|||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 247 acctctctactcacatcgtcacagccatagtcagctctctcatcctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
