Query= MSMg01no272_p08.b1 MSMg01no272_p08.b1 CHROMAT_FILE:
MSMg01no272_p08.b1 PHD_FILE: MSMg01no272_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:14 2005
(346 letters)
>mm_chr4_7902395_7903141
Length = 747
Score = 601 bits (311), Expect = e-176
Identities = 338/347 (97%), Gaps = 1/347 (0%)
Strand = Plus / Plus
Query: 1 aaacttaccatgtagaacataggaattgcaggtgcctaatgttgtcttcttt-atatacc 59
||||||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||
Sbjct: 201 aaacttaccatgtagaacataggaatttcaggtccctaatgttgtctttttttatatacc 260
Query: 60 tttatagctttatatcatatacctttatacctttatattctaatgttacatgcacaactg 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tttatagctttatatcatatacctttatacctttatattctaatgttacatgcacaacag 320
Query: 120 tatattatagtgtatgtggtatgtaatggaaaagtagaagcgaattgaattttgttcttt 179
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct: 321 tatattatagtgtatgtggtgtgtaatggaaaagtagaagccaattgaattttgttcctt 380
Query: 180 aaaccttttaaagtaataacccaagcccacacaatgtaataaaaaaaattcttgtttgac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaccttttaaagtaataacccaagcccacacaatgtaataaaaaaaattcttgtttgac 440
Query: 240 attatacagatagtacattaagtttgaagaatatttgagtagtttctcaaaaatgtaagg 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 attatacagatagtacattaagtttgaagaatatttgagtagtttctcagaaatgtaagg 500
Query: 300 ttttctcaccaatatttattgccatcttgaggtatgtgaattctcta 346
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttctcaccaatatttattgccatcttgaggtatgtgaattctcta 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 747
Length adjustment: 9
Effective length of query: 337
Effective length of database: 738
Effective search space: 248706
Effective search space used: 248706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_p08.g1 MSMg01no272_p08.g1 CHROMAT_FILE:
MSMg01no272_p08.g1 PHD_FILE: MSMg01no272_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:14 2005
(288 letters)
>mm_chr4_8052413_8053097
Length = 685
Score = 445 bits (230), Expect = e-129
Identities = 277/298 (92%), Gaps = 15/298 (5%)
Strand = Plus / Minus
Query: 1 catacatgaatactgtgtttatattatttccatccctccctcaccctcacccctcacctc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 306 catacatgaatactgtgtttatattatttccatccctccctcaccctcacccctcaccgc 247
Query: 61 atcctcaccactccatctcaaattcatgacttcttctttattattgttatacacacatac 120
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct: 246 atcctcaccactccgtctcaaattcatgacttctt---tattattgttacacacacacac 190
Query: 121 acacacacacacacacacacacacacacaca------gccta-tgagtcactcagccttt 173
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 189 acacacacacacacacacacacacacacacacacacagcctactgagtcactcagccttt 130
Query: 174 ctcaaatgtacatgtgtttggaatttgattgctggagctctttttg-aaaaaaaaactag 232
||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 129 ctcaaatgtacctgtgtttggaatttgattgctggggctctttttggaaaaaaaaactag 70
Query: 233 aaaccattttatttatttattctattattattatta-t-tactgttgttattgtttgt 288
|||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 69 aaaccattttatttatttattctattattattattactgt--tgttgttattgtttgt 14
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 685
Length adjustment: 9
Effective length of query: 279
Effective length of database: 676
Effective search space: 188604
Effective search space used: 188604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
