BAC Information

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BAC

Clone NameMSMg01-273N13
Chromosome4 (Build37)
Map Location 7,198,754 - 7,199,242
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
Downstream geneCar8, LOC100039494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273N13.T7 (MSMg01no273_n13.b1)MSMg01-273N13.TJ (MSMg01no273_n13.g1)
ACCAG412740AG412741
length728724
length of high quality
(start - end)
494 (44 - 537)290 (72 - 361)
definitionCHROMAT_FILE: MSMg01no273_n13.b1 PHD_FILE: MSMg01no273_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:18 2005CHROMAT_FILE: MSMg01no273_n13.g1 PHD_FILE: MSMg01no273_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACACTTGTTTCCTGACTATAGATATTTACTTAATTATCCCCTACTAG
TGAGCATATATTTTAGGATACACCAGAATGGCTGCCATATGAAAGCATGG
GTGCTGTTCAGACACTGAATTGAGCACATGGGAGGCTTTGGATAAGGAAT
TCTGTGTTGTGATTTTTGTTATAAATATAACTATACCCTGTTACATGTCA
TTTTTCCCCGTAGGGGGAAGGTTGGTTTTCTTCAAATCAGACTCCTGCAA
GAACTTTTCATGTGTGCAGTGATTTCTTAGGCAAGCCTACAACCATTTCA
AGACATTTCAAAAAGCTGTGACCCTTACCCTTGAAGGGCCATCTAGGAAG
GCAGAAACAGGATGTGATTTCAGAGTCCAGCAAGAGAACTACTGTGAGAA
ACAGAGAGGAGTCTCACAAATAGACTCGCAGGCTCAGGGTATTCATTCTC
AGAAGATGCCCACAAGATTCAGGTGCTCCTGGAGTGTGTAATTCAGAGAC
ACACTATGGTCAGAAAACAGTCACAAATTATAGCACTTACTTTAGCTGTT
TCCATCTTTCCCAGTGTGTGTACCCTGTACCTCAGATTACACAGACCATA
AACCCTATTATTCCTGAAGAATCTACAGAATAATTACCTCCAATCTCATA
GAGGCAACGCCCACTACCCTGTATTAAG
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACTTGAAAAAATGTTCACCCTCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGTCGGTTCCTCAGATAACTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCTTTTTGTTATCTCCCCACCACGCCCCAACAGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGACATATTTATAATAGCCAGAAGCT
GGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGA
TATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAA
CACATGAAACTCAAGAAGAATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_n13.b1 MSMg01no273_n13.b1 CHROMAT_FILE:
MSMg01no273_n13.b1 PHD_FILE: MSMg01no273_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:18 2005
         (494 letters)



>mm_chr4_7198550_7199442
          Length = 893

 Score =  919 bits (475), Expect = 0.0
 Identities = 486/493 (98%), Gaps = 7/493 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacacttg---tttcctgactatagatatttacttaattatcccctactagtgag 61
           |||||||||||||   |    |||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gaattcacacttgaact----tgactatagatatttacttaattatcccctactagtgag 638

                                                                       
Query: 62  catatattttaggatacaccagaatggctgccatatgaaagcatgggtgctgttcagaca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 catatattttaggatacaccagaatggctgccatatgaaagcatgggtgctgttcagaca 578

                                                                       
Query: 122 ctgaattgagcacatgggaggctttggataaggaattctgtgttgtgatttttgttataa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ctgaattgagcacatgggaggctttggataaggaattctgtgttgtgatttttgttataa 518

                                                                       
Query: 182 atataactataccctgttacatgtcatttttccccgtagggggaaggttggttttcttca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atataactataccctgttacatgtcatttttccccgtagggggaaggttggttttcttca 458

                                                                       
Query: 242 aatcagactcctgcaagaacttttcatgtgtgcagtgatttcttaggcaagcctacaacc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aatcagactcctgcaagaacttttcatgtgtgcagtgatttcttaggcaagcctacaacc 398

                                                                       
Query: 302 atttcaagacatttcaaaaagctgtgacccttacccttgaagggccatctaggaaggcag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atttcaagacatttcaaaaagctgtgacccttacccttgaagggccatctaggaaggcag 338

                                                                       
Query: 362 aaacaggatgtgatttcagagtccagcaagagaactactgtgagaaacagagaggagtct 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aaacaggatgtgatttcagagtccagcaagagaactactgtgagaaacagagaggagtct 278

                                                                       
Query: 422 cacaaatagactcgcaggctcagggtattcattctcagaagatgcccacaagattcaggt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cacaaatagactcgcaggctcagggtattcattctcagaagatgcccacaagattcaggt 218

                        
Query: 482 gctcctggagtgt 494
           |||||||||||||
Sbjct: 217 gctcctggagtgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 893
Length adjustment: 10
Effective length of query: 484
Effective length of database: 883
Effective search space:   427372
Effective search space used:   427372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)