Query= MSMg01no274_f03.b1 MSMg01no274_f03.b1 CHROMAT_FILE:
MSMg01no274_f03.b1 PHD_FILE: MSMg01no274_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:50 2005
(533 letters)
>mm_chr4_153898543_153899478
Length = 936
Score = 988 bits (511), Expect = 0.0
Identities = 528/535 (98%), Gaps = 3/535 (0%)
Strand = Plus / Minus
Query: 2 actcgtttgctacaagagagtaagcagtgacattggagcaaagatgacagatcaaagcca 61
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 736 actcgtttgctacaagagagtaagcagtgacattggagcaaagatgacagatgaaagcca 677
Query: 62 aggagggcccgttccgtttggcttccctgaggattggcccaggagtggggtgcaccagtc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aggagggcccgttccgtttggcttccctgaggattggcccaggagtggggtgcaccagtc 617
Query: 122 ggtggcaggctgcactccagagctccggtccttggggggggg---ctacaaacaggagga 178
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 616 tgtggcaggctgcactccagagctccggtccttgggggggggggactacaaacaggagga 557
Query: 179 atgacccagtggtcctcgggtggccagttgagaaggagggtcagagctatcgtttgtggt 238
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 556 atgacccagtggtcctcgggtggccagttgagaaggaggatcagagctatcgtttgtggt 497
Query: 239 gtcacttgggatgctgtgaccatactttatttcctttctgggaggaaagttcttgtttca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gtcacttgggatgctgtgaccatactttatttcctttctgggaggaaagttcttgtttca 437
Query: 299 gaagacagaacgaaaaggcaggtatggaggcatggctggcatgaggtgactgtggaggaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaagacagaacgaaaaggcaggtatggaggcatggctggcatgaggtgactgtggaggaa 377
Query: 359 aatgttctccacacgtgagtcaggctagggtgactacataacacagtgaccagacagtga 418
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 376 aatgttctccacacgtgagtcaggctagggtggctacataacacagtgaccagacagtga 317
Query: 419 cataggaggggttttgactccacatcctggtagggttcactcccaccccaggtacactct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cataggaggggttttgactccacatcctggtagggttcactcccaccccaggtacactct 257
Query: 479 cctttgatggagcagagctagagctgcagcagctaagcctgcccctctgatgttc 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cctttgatggagcagagctagagctgcagcagctaagcctgcccctctgatgttc 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 936
Length adjustment: 10
Effective length of query: 523
Effective length of database: 926
Effective search space: 484298
Effective search space used: 484298
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no274_f03.g1 MSMg01no274_f03.g1 CHROMAT_FILE:
MSMg01no274_f03.g1 PHD_FILE: MSMg01no274_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:50 2005
(290 letters)
>mm_chr4_153725294_153725984
Length = 691
Score = 503 bits (260), Expect = e-147
Identities = 281/288 (97%), Gaps = 1/288 (0%)
Strand = Plus / Plus
Query: 1 tctatgtggaccaggctggtcttgaactcacagagatccatctgtttcacccccaggcat 60
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct: 201 tctatgtggaccaggctggtcttgaactcacagagatccatctggctcagcaccaggcat 260
Query: 61 tgggattaaagtcatgtgccactgtatcaggcctgtgcttagacatatatttaaatgtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaagtcatgtgccactgtatcaggcctgtgcttagacatatatttaaatgtag 320
Query: 121 ggatgcagtaagaaaattcaggttggttcttactgggataatttaaaggtcaccctggag 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggattcagtaagaaaattcaggttggttcttactgggataatttaaaggtcaccctggag 380
Query: 181 ggtggcaatgacctcggcggctatgctacccttctcctctggccttatgtcttctggact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtggcaatgacctcggcggctatgctacccttctcctctggccttatgtcttctggact 440
Query: 241 tcagcgtgtgtctgtagaaggacagagctgagaacag-acatgcctgg 287
|||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 441 tcagcgtgtgtctgtagaaggacagagctgagaagaggacatgcctgg 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space: 191642
Effective search space used: 191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
