Query= MSMg01no274_k05.b1 MSMg01no274_k05.b1 CHROMAT_FILE:
MSMg01no274_k05.b1 PHD_FILE: MSMg01no274_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:13 2005
(614 letters)
>mm_chr4_114453970_114454983
Length = 1014
Score = 1017 bits (526), Expect = 0.0
Identities = 586/610 (96%), Gaps = 8/610 (1%)
Strand = Plus / Plus
Query: 1 tttataacacatccatgaggccagcactagtacagtataacagagaagagaacaaatgtt 60
||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 201 tttataaaacatccatgaggccagcactagcacagtataacagagaagagaacaactgtt 260
Query: 61 tccagcctgtctcaccttacaaggggtgatgactcataccttcaatcccagcattcagga 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccagcctgtctcaccttacacggggtgatgactcataccttcaatcccagcattcagga 320
Query: 121 ggcagaagcaggtagatctctgcgaattcaaggccagccaaaaatatgcctctgccgtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcagaagcaggtagatctctgcgaattcaaggccagccaaaaatatgcctctgccgtgg 380
Query: 181 gaagcgcaaagctt----gttttgtctggagaggtagaactctgcccaagaaggacctgt 236
|||||||||||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gaagcgcaaagcttgaaag----gtctggagaggtagagctctgcccaagaaggacctgt 436
Query: 237 gtattatgctctctggctctgagtgcacacaagaccctgacggggatactgggcaaggag 296
| | | ||||||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 437 ggaggaggctctctggttctgagtgcacacaagaccctgacagagatactgggcaaggag 496
Query: 297 atgctttattgtctatgcagatcctccgtgcccttgtctcagcaccaggaaagtcccccc 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 497 atgctttattgtctatgcagatcctccgtgcccttgtctcagcaccaggaaagttccccc 556
Query: 357 agcaactttgaactgtccacaaccttgaactctgtttccattgggtttcatccagagttc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agcaactttgaactgtccacaaccttgaactctgtttccattgggtttcatccagagttc 616
Query: 417 tcagcaactccacaaggaaggtgtagaatactaaagcacagaagaactgcctaatttacc 476
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 617 tcagcaactccacaaggaaggtgtagaatactaaagcacagaagaacagcctaatttacc 676
Query: 477 ccaagccacacagcctagaagcagagaatctcaccaccactgaacacatgacttccatag 536
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 677 ccaagccacacagcctagaagcagataatctcaccaccactgcacacatgacttccatag 736
Query: 537 cagaccctttttggcacgtgctcggagcataggcctggacacagactccaggatctcatc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cagaccctttttggcacgtgctcggagcataggcctggacacagactccaggatctcatc 796
Query: 597 tgtggccctg 606
||||||||||
Sbjct: 797 tgtggccctg 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no274_k05.g1 MSMg01no274_k05.g1 CHROMAT_FILE:
MSMg01no274_k05.g1 PHD_FILE: MSMg01no274_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:13 2005
(645 letters)
>mm_chr4_114571023_114572068
Length = 1046
Score = 1218 bits (630), Expect = 0.0
Identities = 642/646 (99%), Gaps = 1/646 (0%)
Strand = Plus / Minus
Query: 1 tgacttatactcagcctatgagtgtctagtaagtaggctttagttctctttctctctctt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 846 tgacttatactcagcctatgagtgtctagtaagtaggctttagttttctttctctctctt 787
Query: 61 ccgggggcttcatcttagcatccactgtgatgatggctatctatactaggggtagataag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ccgggggcttcatcttagcatccactgtgatgatggctatctatactaggggtagataag 727
Query: 121 agagaaaaaaggattcccagttctggcaatggtgctgactcttttgacgttagacgaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 agagaaaaaaggattcccagttctggcaatggtgctgactcttttgacgttagacgaaga 667
Query: 181 cttcttacaaggcctcagtttatttgtttgaacagagttggaataagtcagatcctgatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cttcttacaaggcctcagtttatttgtttgaacagagttggaataagtcagatcctgatt 607
Query: 241 tctgctctgggggtcagtggctgtgtcttagctcttctcttctggcaggcttaacagtc- 299
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tctgctatgggggtcagtggctgtgtcttagctcttctcttctggcaggcttaacagtct 547
Query: 300 tttttccaagccaaattttcttaatgcagtgaggatgtagggtctgactgtgctggactc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tttttccaagccaaattttcttaatgcagtgaggatgtagggtctgactgtgctggactc 487
Query: 360 tgcagaaaatcttggcagcacctgtgcccagaggtacagcaagcgaggagagagtggctc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgcagaaaatcttggcagcacctgtgcccagaggtacagcaagcgaggagagagtggctc 427
Query: 420 acttcctttcttagtggtatggtacttttatgtgggaccctgggttttcttctcccttgg 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acttcctttcttggtggtatggtacttttatgtgggaccctgggttttcttctcccttgg 367
Query: 480 cagagccctaaagagttgagcaggactgagtggaagccgtggtccccaaggaggactgag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cagagccctaaagagttgagcaggactgagtggaagccgtggtccccaaggaggactgag 307
Query: 540 tctgtctgcgatgtggaggagtggtcacctggcagtccttgaactcaacaccaaccatga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tctgtctgcgatgtggaggagtggtcacctggcagtccttgaactcaacaccaaccatga 247
Query: 600 actctacagcagtgcaaagtgtgaatgggagtctctgctcacactg 645
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 actctacagcagtgcaaagtgtgaatgggagtctctgctcacactg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space: 657860
Effective search space used: 657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
