BAC Information

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BAC

Clone NameMSMg01-274O18
Chromosome4 (Build37)
Map Location 34,896,688 - 35,051,174
singlet/doubletdoublet
Overlap geneMobkl2b
Upstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga
Downstream geneIfnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274O18.T7 (MSMg01no274_o18.b1)MSMg01-274O18.TJ (MSMg01no274_o18.g1)
ACCAG413514AG413515
length760756
length of high quality
(start - end)
374 (377 - 750)377 (375 - 751)
definitionCHROMAT_FILE: MSMg01no274_o18.b1 PHD_FILE: MSMg01no274_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:33 2005CHROMAT_FILE: MSMg01no274_o18.g1 PHD_FILE: MSMg01no274_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,896,688 - 34,897,061)(35,050,798 - 35,051,174)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAA
GCTCACACAGAAATTTATTTCATAAATATTCTTTAGATTTATCTAGCTCT
TTTAATTGATTTAACCATGTTAGTCTGCTTTCTTACAGTCAAGCCCCCAA
GTGAATCACAAGCGGAATCACAAAAATATAGTTAGCATTTTCCAGATGTA
TTTAAGAAGAGACAAGGAAACTCAGAGCAGAAAACAAGAAGCTAGGAAAA
CAGCTTGCTTTAATAGAAACGACTCATCCTCTATGTTACACAAACCTTTA
CATATCATTGAAAAATCTTTTACCCATATTTAATATGTCCAGAGGAAAAT
AGCTTGTTGTACAAGCCTCCTCCTCTTATAAACATTTTTAAAACCAGGAA
AAAAAATCATCACTTCCAAAATATACTTTGTTTGTCTAATTCTAGACAGG
AATCACTAGTTTCTTTAAAGCCAGAATGACGCTATTCTCCAAATCATACC
TTTGCCAGTTTTTGAAGATATGCTGTGCTTCTTTTCCTTAGTGTGGTGTC
CTTTAGGCTAAGGAACTATTGGAAGTAATGTGCTTTCATCAGTGACAATG
GACTGGGTAAATGGTGGGCTGGAATAAATCAAATTTCAACGAATCCCAAA
AGTAAGAAGGAAACTTAGGAAGGTCAACATAACCTAGTCAAAGATTTCCA
TATGGTCAACTGAAATAGGTAAGAAAATCCAAAGGTTTCTCTTACAGCCA
AGACTAGCAA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGTGTAGGTGGCATGAAGTATGAGACATGAAGAC
ATGATGTCAGCTTACCATGTAGACTATATAGTTTATGGAAGAACTGGATA
AGCACTATGAAGGAGATGAGTTCAGGAATTCACATATATTTGGATTCCTT
TTTTTAAAAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGT
CTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGA
GCCACCATGTGGTGTCTGGGATTTGAACTCAGGACCTCTGGAAAAGCAGT
CATTTTTTTTACCTGCCCAGCCATCTCTCCAGCCCATATGTGGATTTCTA
TACACATATACNAATATATGATAGTATAGAACAACTAGAATTCTTTTTGA
GCCAGGATCGAGGTGAAGTGTTCACAGGAATGGAATGTTTTAGAAGTAGC
ATGTTGTTTTATGTGTGCATGACCACATACACATGCACACACACCCGTTT
TCATGGGCTTCTATCAGTATCACTGCAGGTATGTTAACCTCATTGTATTC
TAAGGACTAGCCAATATTTCTTGAATGGTGGCATCACTCTGGGTGGACTT
CTGAGTTGTCTCCCTCTTTGTGTGTGTGGTTGTCAGCAGTGATGCTTAAA
TAGGTGCGTTTATCAATTGCTGTAGCTACACAGTGTTCCTCCAACCTAGT
GGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_o18.b1 MSMg01no274_o18.b1 CHROMAT_FILE:
MSMg01no274_o18.b1 PHD_FILE: MSMg01no274_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:33 2005
         (374 letters)



>mm_chr4_34896488_34897261
          Length = 774

 Score =  723 bits (374), Expect = 0.0
 Identities = 374/374 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tataaacatttttaaaaccaggaaaaaaaatcatcacttccaaaatatactttgtttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataaacatttttaaaaccaggaaaaaaaatcatcacttccaaaatatactttgtttgtc 260

                                                                       
Query: 61  taattctagacaggaatcactagtttctttaaagccagaatgacgctattctccaaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattctagacaggaatcactagtttctttaaagccagaatgacgctattctccaaatca 320

                                                                       
Query: 121 tacctttgccagtttttgaagatatgctgtgcttcttttccttagtgtggtgtcctttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacctttgccagtttttgaagatatgctgtgcttcttttccttagtgtggtgtcctttag 380

                                                                       
Query: 181 gctaaggaactattggaagtaatgtgctttcatcagtgacaatggactgggtaaatggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctaaggaactattggaagtaatgtgctttcatcagtgacaatggactgggtaaatggtg 440

                                                                       
Query: 241 ggctggaataaatcaaatttcaacgaatcccaaaagtaagaaggaaacttaggaaggtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctggaataaatcaaatttcaacgaatcccaaaagtaagaaggaaacttaggaaggtca 500

                                                                       
Query: 301 acataacctagtcaaagatttccatatggtcaactgaaataggtaagaaaatccaaaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acataacctagtcaaagatttccatatggtcaactgaaataggtaagaaaatccaaaggt 560

                         
Query: 361 ttctcttacagcca 374
           ||||||||||||||
Sbjct: 561 ttctcttacagcca 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no274_o18.g1 MSMg01no274_o18.g1 CHROMAT_FILE:
MSMg01no274_o18.g1 PHD_FILE: MSMg01no274_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:33 2005
         (377 letters)



>mm_chr4_35050598_35051374
          Length = 777

 Score =  685 bits (354), Expect = 0.0
 Identities = 371/377 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctccagcccatatgtggatttctatacacatatacnaatatatgatagtatagaacaa 60
           ||||||||||||||||||||||| ||||||||||||| |||||||| ||| |||||||||
Sbjct: 577 ctctccagcccatatgtggatttttatacacatatacaaatatatgttagcatagaacaa 518

                                                                       
Query: 61  ctagaattctttttgagccaggatcgaggtgaagtgttcacaggaatggaatgttttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctagaattctttttgagccaggatcgaggtgaagtgttcacaggaatggaatgttttaga 458

                                                                       
Query: 121 agtagcatgttgttttatgtgtgcatgaccacatacacatgcacacacacccgttttcat 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 457 agtagcatgttgttttatgtgtgcatgaccacatatacatgcacacacacccgttttcat 398

                                                                       
Query: 181 gggcttctatcagtatcactgcaggtatgttaacctcattgtattctaaggactagccaa 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gggcttctatcagtatcgctgcaggtatgttaacctcattgtattctaaggactagccaa 338

                                                                       
Query: 241 tatttcttgaatggtggcatcactctgggtggacttctgagttgtctccctctttgtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tatttcttgaatggtggcatcactctgggtggacttctgagttgtctccctctttgtgtg 278

                                                                       
Query: 301 tgtggttgtcagcagtgatgcttaaataggtgcgtttatcaattgctgtagctacacagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgtggttgtcagcagtgatgcttaaataggtgcgtttatcaattgctgtagctacacagt 218

                            
Query: 361 gttcctccaacctagtg 377
           |||||||||||||||||
Sbjct: 217 gttcctccaacctagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)