BAC Information

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BAC

Clone NameMSMg01-275F08
Chromosome4 (Build37)
Map Location 115,832,977 - 115,995,407
singlet/doubletdoublet
Overlap geneTspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2
Upstream geneLOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1
Downstream geneLOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275F08.T7 (MSMg01no275_f08.b1)MSMg01-275F08.TJ (MSMg01no275_f08.g1)
ACCAG413816AG413817
length764764
length of high quality
(start - end)
309 (40 - 348)283 (69 - 351)
definitionCHROMAT_FILE: MSMg01no275_f08.b1 PHD_FILE: MSMg01no275_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:03 2005CHROMAT_FILE: MSMg01no275_f08.g1 PHD_FILE: MSMg01no275_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,995,104 - 115,995,407)(115,832,977 - 115,833,259)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TGATACTTACGTGAGATGAAGAGCAACAGGAACTTGTAAGGAAGGTCAAC
CCCAAAAAAATGGTGTACCAAAGGCATGAAATATGGCTAGGCAGAGACCA
GCAAACCTTGTATGCCTGCAGAACCAAAAATCGTACAGTATAGGATATGG
CAAGAAACAGGCAAAAAGGTGATGGGGGCCTTGAGTCTGGTCCTGGGACT
GTCTGCCTTCAGTCATTCGACTTCCCGGCGTCACATAGGCACACAGAGAG
CCCATCCTTCAGAATTCTCTGCAGCTAAGCTGGGACTGAAAGGGAANTCT
TTTCTTTTTTTTTCCTNNNACGNNANCGCACAGATGGAAGAGCGACTAGC
TGACTTCATTTCCTCTAACACAAAAAAATAATGTGTTGCCCTTGGCAGAT
GGAGCACTAAGCTTTATTCATCATCAGGTGATTGAGATGGCCCGAGACTG
CCTGGATAAATCTCGGAGTGGCCTCATTACGTCACACTATTTCTATGAAC
TTCAAGAGAATTTGGAAAAGCTTCTGCAAGATGTAAGTGTCTTGACGAGG
AATGTAATGACACTTCCACAAGGTCATCTCGGGAATTGGCAGTGAGCTCA
CTCTTCCAGCTGCTGGCCACAATCAGGTCTCCTTGCCAGTGAATAGGAGT
TTCCATGTTTGGTACTGATGATCTGATGTTCTTCCCACGGCCTTTCCATC
ACTAAGAGAAGCCT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATATATGGATGTTTTTTCTGCATAAAAGGTC
CATGGTTTTCATCAGACGCTAGTAACTCAAAGGAGCCTAGGAAAGTCTGA
GTTAATCACCAAAAACCAGACAATATAGTCCTTTGGGAGTCAGATAGCCC
AAGGCAGGGGAATATGACCTTTAAGGCTCTGAAGATTAAGATCAGGACCT
GAGTAGATCAGACTGTAAGAAAGGGTATAACTCTTGCCAAGGACGGGAAC
TTACTGGAATTCCTGTCCTTTACCTTTGCTGTCCTGGTGCCCCTTACTGG
TGTTTAGTGCNCAGCCCTNAGCATNCCCGCAANATGGCTTTGACATTGGT
CACCACCCTGACCCCCTTCAAAGAAACAAAAAAGCTAGTGTTTCAGGTGG
CAAAGTATGCACAGGAGAAGCAATTAGACCGTGATGAAGTGGCAGCCCTC
CCTGGACAAACAAATCCCCTTCCTCCTCCTGCTTCCACACAGGCACTTGT
GGGAGGAATAGAGTTTGTGTGGGAGATGCAGTTTGCTGGCAAAGGGTGAA
GGCCAACTAGTTCTCTATCTAGAATCCTAGAAGATTCTTGGTCAGGCTTC
ACAGAAGCTGTGTGGCTCTGGGCTAGTCTGTTCTTTTTTGGGCCCAACAA
GTGGGTGGGTGATAACTGTGGGCTGCTCTGGAAAAGCCTATATAGACAGA
TGTGGTGGCAGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_f08.b1 MSMg01no275_f08.b1 CHROMAT_FILE:
MSMg01no275_f08.b1 PHD_FILE: MSMg01no275_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:03 2005
         (309 letters)



>mm_chr4_115994901_115995609
          Length = 709

 Score =  565 bits (292), Expect = e-165
 Identities = 301/304 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatgatacttacgtgagatgaagagcaacaggaacttgtaaggaaggtcaaccc 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggaattcatgatacttaggtgagatgaagagcaacaggaacttgtaaggaaggtcaaccc 448

                                                                       
Query: 64  caaaaaaatggtgtaccaaaggcatgaaatatggctaggcagagaccagcaaaccttgta 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caaaaaaatggtgtaacaaaggcatgaaatatggctaggcagagaccagcaaaccttgta 388

                                                                       
Query: 124 tgcctgcagaaccaaaaatcgtacagtataggatatggcaagaaacaggcaaaaaggtga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgcctgcagaaccaaaaatcgtacagtataggatatggcaagaaacaggcaaaaaggtga 328

                                                                       
Query: 184 tgggggccttgagtctggtcctgggactgtctgccttcagtcattcgacttcccggcgtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgggggccttgagtctggtcctgggactgtctgccttcagtcattcgacttcccggcgtc 268

                                                                       
Query: 244 acataggcacacagagagcccatccttcagaattctctgcagctaagctgggactgaaag 303
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 267 acataggcacacagagagcccatccttcagaattcgctgcagctaagctgggactgaaag 208

               
Query: 304 ggaa 307
           ||||
Sbjct: 207 ggaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no275_f08.g1 MSMg01no275_f08.g1 CHROMAT_FILE:
MSMg01no275_f08.g1 PHD_FILE: MSMg01no275_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:03 2005
         (283 letters)



>mm_chr4_115832777_115833459
          Length = 683

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatatggatgttttttctgcataaaaggtccatggttttcatcagacgctagtaactc 60
           |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 catatagggatgttttttctgcataaaaggtccatggttttcatcagaggctagtaactc 260

                                                                       
Query: 61  aaaggagcctaggaaagtctgagttaatcaccaaaaaccagacaatatagtcctttggga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 aaaggagcctaggaaagtctgagttaatcaccaaaaaccagacaatatagtcgtttggga 320

                                                                       
Query: 121 gtcagatagcccaaggcaggggaatatgacctttaaggctctgaagattaagatcaggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcagatagcccaaggcaggggaatatgacctttaaggctctgaagattaagatcaggac 380

                                                                       
Query: 181 ctgagtagatcagactgtaagaaagggtataactcttgccaaggacgggaacttactgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagtagatcagactgtaagaaagggtataactcttgccaaggacgggaacttactgga 440

                                                      
Query: 241 attcctgtcctttacctttgctgtcctggtgccccttactggt 283
           ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 attcctgccctttacctttgctgtcctggtgccccttactggt 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)