BAC Information

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BAC

Clone NameMSMg01-276I04
Chromosome4 (Build37)
Map Location 55,420,355 - 55,585,819
singlet/doubletdoublet
Overlap geneLOC100041348, Klf4
Upstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276I04.T7 (MSMg01no276_i04.b1)MSMg01-276I04.TJ (MSMg01no276_i04.g1)
ACCAG414674AG414675
length753752
length of high quality
(start - end)
326 (381 - 706)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no276_i04.b1 PHD_FILE: MSMg01no276_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:28 2005CHROMAT_FILE: MSMg01no276_i04.g1 PHD_FILE: MSMg01no276_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,585,494 - 55,585,819)(55,420,355 - 55,420,641)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAGTGCATTCCTGGACTCCCTAAGGTTTGCCATTGCTCTCATTT
CTGCATCCTGCTCCCTTTTCCCTCCAAACACTGCAGACTCAAGGTTCCAG
TGAGTAGAAGGGGTGCCCTGATCCTAAGTGAGGTACCCACCTCAGGGTAA
AATTAAGATAAGAATGCAAAGCCATAAACTGAATGGTAAACAAACAAGGA
AGAGACATCTGGTCCACACCATGATCTTCTCTACGAGCACTTTCATGACA
CACCAGGAGTCAATTGACTCTTACCTGTGGCTGCAAGCGTGAGGACGGGG
AGGCTGGAATATATATTGGCCCTCACAGGAGATGTACTGGGGTACATTGA
GTTGTCCTGGACCTGAAGGTAATTCCAGGAGCCTTCTGATCTACCCCAGC
TGAGGAAGCACACCTCTAGTTATCCTCAGCAGCTGACAGGACTTCTTCCT
AAAACCTGTGGAGTACCCTCCCGAAACCGACCCGTTAGCTCTCAGTAAAG
GCATCAAGCCCTCTCTCTTTCTGCATTCAACATCCCCTGGCCTTCAGGAG
AGATTCCAACAGTATCTCTCCTTCACTGTCACTATCCCTGTGCTCAGATA
TCTCCCTGTCAGTAATCACCCCTCCTGAGTTTATTTAGCTCTTTTTCTCT
CCTGTGGTCCTCCAGACTCATACAGACTAATATACAGACCGACCGACAGA
CAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTGCCTGGAGTGGGCTTCCTTGTCT
GACTGAGGTCAACATAAGCACCCGATTTTGGAAAATAAGTGCTTTGAAGG
ACACCTTTTCATGGAGAAGGACGAGGAAAGGGTTCTCTGAGAAAAGACCT
TAGAATCTAGAAGATGAGAGAGAGGCAGCTCTGTAAAGATCCGTGGGAAG
TGCCCTGCATGGGAAGAATAGAGGTATCCAGTCAGTGAGGAACTTCCTGC
ATTCCAGAGGCAGGAAGAAAGGTCTGGATGAGGTGTGTGGAGTTCAGTGA
TGGAGCACTTGTTTAGTATGCCCCCCCCCCCCATTCTATCCCCACCATCA
CAAAGACATAAACCAATAAACAAGTAAATAGATAGGCAGACAGACGGACG
GACAGACAGAGACAGACATAGATAACTTTTTTACCTATGCAACACCAGAG
TTATTTGCTACAATGGGAGGCTCCAACACTTGGGAAAGCTGAAGGGTTTA
CATACTGCCAAGCAAGAATGGCAGAAGCAGAGGAAGAGATGGTGGCTGTT
AATGGGGGTCAGGAGGCAAGTTGGGGTTCAGGTAGAGCAGGTACAGTCAG
GATCCCTCAAAAAGTGCCCTTGGGCCCTGAGGAAAGAGACAGATGCCGTG
AGTGTGCCCGAGTTGAGGCCAAGATTGCAGAGGGGCAGAGGTGCCCCTGT
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_i04.b1 MSMg01no276_i04.b1 CHROMAT_FILE:
MSMg01no276_i04.b1 PHD_FILE: MSMg01no276_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:28 2005
         (326 letters)



>mm_chr4_55585294_55586019
          Length = 726

 Score =  630 bits (326), Expect = 0.0
 Identities = 326/326 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatgtactggggtacattgagttgtcctggacctgaaggtaattccaggagccttctgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gatgtactggggtacattgagttgtcctggacctgaaggtaattccaggagccttctgat 467

                                                                       
Query: 61  ctaccccagctgaggaagcacacctctagttatcctcagcagctgacaggacttcttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctaccccagctgaggaagcacacctctagttatcctcagcagctgacaggacttcttcct 407

                                                                       
Query: 121 aaaacctgtggagtaccctcccgaaaccgacccgttagctctcagtaaaggcatcaagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaaacctgtggagtaccctcccgaaaccgacccgttagctctcagtaaaggcatcaagcc 347

                                                                       
Query: 181 ctctctctttctgcattcaacatcccctggccttcaggagagattccaacagtatctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctctctctttctgcattcaacatcccctggccttcaggagagattccaacagtatctctc 287

                                                                       
Query: 241 cttcactgtcactatccctgtgctcagatatctccctgtcagtaatcacccctcctgagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cttcactgtcactatccctgtgctcagatatctccctgtcagtaatcacccctcctgagt 227

                                     
Query: 301 ttatttagctctttttctctcctgtg 326
           ||||||||||||||||||||||||||
Sbjct: 226 ttatttagctctttttctctcctgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no276_i04.g1 MSMg01no276_i04.g1 CHROMAT_FILE:
MSMg01no276_i04.g1 PHD_FILE: MSMg01no276_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:28 2005
         (289 letters)



>mm_chr4_55420155_55420843
          Length = 689

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgcctggagtgggcttccttgtctgactgaggtcaacataagcacccgattttggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 201 attgcctggagtgggcttccttgtctgactgaggtcaacataagcaggtgattttggaaa 260

                                                                       
Query: 61  ataagtgctttgaaggacaccttttcatggagaaggacgaggaaagggttctctgagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataagtgctttgaaggacaccttttcatggagaaggacgaggaaagggttctctgagaaa 320

                                                                       
Query: 121 agaccttagaatctagaagatgagagagaggcagctctgtaaagatccgtgggaagtgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaccttagaatctagaagatgagagagaggcagctctgtaaagatccgtgggaagtgcc 380

                                                                       
Query: 181 ctgcatgggaagaatagaggtatccagtcagtgaggaacttcctgcattccagaggcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcatgggaagaatagaggtatccagtcagtgaggaacttcctgcattccagaggcagg 440

                                                          
Query: 241 aagaaaggtctggatgaggtgtgtggagttcagtgatggagcacttg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaaaggtctggatgaggtgtgtggagttcagtgatggagcacttg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)