BAC Information

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BAC

Clone NameMSMg01-276P15
Chromosome4 (Build37)
Map Location 35,645,469 - 35,645,755
singlet/doubletsinglet
Overlap genenone
Upstream gene1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream geneLingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276P15.T7 (MSMg01no276_p15.b1)MSMg01-276P15.TJ (MSMg01no276_p15.g1)
ACCAG415007AG415008
length764769
length of high quality
(start - end)
287 (74 - 360)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no276_p15.b1 PHD_FILE: MSMg01no276_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:01 2005CHROMAT_FILE: MSMg01no276_p15.g1 PHD_FILE: MSMg01no276_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTGTTTGCTCCTTCAATGGCCCCGAGAGTCCTCCTTGGACTGG
CATAAGAACTTGCTGATATTATGCCCGACTAGATTCAATACAAAGCACAT
TTTTTTGCCTAGAGTCCTCTGAAACGAATAAATGGGTTCAGAGAGATGGA
AAATAACTGGAAACTGTCTCCTGGCTGGTGAGGAGAGATAACAGTAGCTC
ACTGTTTAGGCAGTTCTGTGTCTTCCCAGAACAGCACTTGTAAACTGAGA
GGTACAAACCTTTCAAGTAATGTCTTGAGTGAATAAGCAGATGTAGGAGA
CTTGAAGTGCTTTTTATTTTCCCCACCCCCCCGCGAATGCTACACTGCCT
CTAACCGCAGCACTCATGGTTTGGGTTCCAAACCATAAATAGACACATTC
TGTATTAAAAACAATTTCAATTTTTGTTATATTTATTTTCTTTCAAATAG
TGCCAATATTGGCCCAGATTTTCACAGAAAATTCAGGAAACTACTTAATT
CCTTCTCGACTTTGATTGGCTATCACCAGTCAGCTTTTGCCACCTTCTGT
TTTAAGAAATGTAGAACATTTAATTTCATACTATCCAAGCAGAATCTCCT
TCCCCATGTAGTATCTGCTGAGTGTACATAATCAAAATAACTTAATTGAA
CATTGGTAAATAAAATCTTCAAATTGTGCTTCAAATGTGAATACACATCA
GTCCTTTGGGTTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATCCCCTCCAGTTTCCTTAATT
TCCCCTGCAATTCTTCTACAAGACTCCCAAGTTCTATCTAATGTTTAGCT
GTGGGTCTCTACATCTGTTTCCATTGGCTGCGGGATGGAACCTCTCAGAG
AAGAGTTATACTAGGCTCCTGCCTGCAAATACAACAGATTATCATTAATA
GTGTCAGGGATTGGTTCTTGCCTATGAGATGGGTCTCAAGCTAGGCCAGT
CATTGGTTGGCCATTCCTTGTGTCTCTGCTCCATCTTTGCCCCTGAACAT
CTTGAAGGTAGGGTTTTTTTTGTTTCTCGCACCCCCCCCAGAAGAGGATT
GAATTGATAAAACCAAGAGTGAGCTTGGTTTTGAGTTGATGAAAGAAGTA
GATGAAAGTTAAAAGTTTAAAGCTTGGGGACTGTGGTCTAGTTGTCATAT
TGGGTAACATTTAAGTAAGGCAAGTGGCTCAAACCTTGGAGATTCTTTGC
ATTGCCAATAACAATTTGCACAACTAAAATGATTTGAGAATTGAGGTAGA
ACAGCTCACTCCAAAACAATTCAACTTTCATCAGCATGGTAGAAGTAATA
GGAAGAACTTCTGAACAAGTTTGTTGCGCTTTAGGATATGTGGACAACAC
TATAGGAATCACCAGTAAAGATGGGAACATAAGTAAGTCCCGACTGTCTA
AAGGAGAATAAATAATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_p15.b1 MSMg01no276_p15.b1 CHROMAT_FILE:
MSMg01no276_p15.b1 PHD_FILE: MSMg01no276_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:01 2005
         (287 letters)



>mm_chr4_35645269_35645955
          Length = 687

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggccccgagagtcctccttggactggcataagaacttgctgatattatgcccgactaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 487 tggccccgagagtcctccttggactggcataagaacttgctgatattatgcaggactaga 428

                                                                       
Query: 61  ttcaatacaaagcacatttttttgcctagagtcctctgaaacgaataaatgggttcagag 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tttaatacaaagcacatttttttgcctagagtcctctgaaacgaataaatgggttcagag 368

                                                                       
Query: 121 agatggaaaataactggaaactgtctcctggctggtgaggagagataacagtagctcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agatggaaaataactggaaactgtctcctggctggtgaggagagataacagtagctcact 308

                                                                       
Query: 181 gtttaggcagttctgtgtcttcccagaacagcacttgtaaactgagaggtacaaaccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtttaggcagttctgtgtcttcccagaacagcacttgtaaactgagaggtacaaaccttt 248

                                                          
Query: 241 caagtaatgtcttgagtgaataagcagatgtaggagacttgaagtgc 287
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaagtaatgtcttgagtgaataagcagatgtaggagacttgaagtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)