Query= MSMg01no277_o05.b1 MSMg01no277_o05.b1 CHROMAT_FILE:
MSMg01no277_o05.b1 PHD_FILE: MSMg01no277_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:06 2005
(380 letters)
>mm_chr4_30529932_30530711
Length = 780
Score = 671 bits (347), Expect = 0.0
Identities = 371/379 (97%)
Strand = Plus / Plus
Query: 2 ctgagagcatgaagtttgaacattcacacatctagataataagtgcttctacgactgatg 61
|||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct: 202 ctgagagcatgaagtttgaacattcagacatctagatagtaagtgcttctatgactgatt 261
Query: 62 tctatgaacaagtacagaatactaaaagagagatgcatagtttgaattcaaattcacctt 121
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tctatgaacaagtgcagaatactaaaagagagatgcatagtttgaattcaaattcacctt 321
Query: 122 gaaaggaaagccgaaaaaggatgtgttgattacttacagtgggaaataaagatctctaaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaaaggaaagccgaaaaaggatgtgttgattacttacagtgggaaataaagatctctaaa 381
Query: 182 tcaccacaaatggcattgtaatagagtctttccacttttcaaaagctgggagttaggtaa 241
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 382 tcaccacaaatggcattgtaatagagtctttcctcttttcaaaagctggaagttaggtaa 441
Query: 242 gaaattaatttgtcagtaaacatctttagaactaaagtggtttgtagctgacactgccaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaaattaatttgtcagtaaacatctttagaactaaagtggtttgtagctgacactgccaa 501
Query: 302 taaaacttttctaaatggagttgatttatttttaacaaaatgattgatttcttggtttac 361
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 taaaacttttctaaatgaagttgatttatttttaacaaaatgattgatttcttggtttac 561
Query: 362 ttttatagcaattaatttg 380
|||||||||||||||||||
Sbjct: 562 ttttatagcaattaatttg 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no277_o05.g1 MSMg01no277_o05.g1 CHROMAT_FILE:
MSMg01no277_o05.g1 PHD_FILE: MSMg01no277_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:06 2005
(588 letters)
>mm_chr4_30711311_30712297
Length = 987
Score = 725 bits (375), Expect = 0.0
Identities = 399/407 (98%), Gaps = 1/407 (0%)
Strand = Plus / Minus
Query: 1 acagtgccttctgccccataaactatggctatctgagtatctgtgggggacactgattat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 acagtgccttctgccccataaactatggctatctgagtatctgtgggggacactgattat 347
Query: 61 tttcaagtcaaactacactgccgtgaattctaaagcttactcatatttcttattcttctg 120
|||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 346 tttcaagt-taattacactgccatgaattctaaagcttactcatatttcttattcttctg 288
Query: 121 tttttaatcccacttttaaagtgtttcatgcagtatgactcgtttagagaaagctcttat 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 287 tttttaatcccacttttaaagtgtttcatgcagtatgactcgtttggagaaagctcttat 228
Query: 181 aacatccaaataaaataactttctgcttaatgtagaaaacattcatttatttcttgaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aacatccaaataaaataactttctgcttaatgtagaaaacattcatttatttcttgaaag 168
Query: 241 tttccaaaagctttactgttccaacatttcccaaatgtccaagtccaaagtctccacaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tttccaaaagctttactgttccaacatttcccaaatgtccaagtccaaagtctccacaga 108
Query: 301 cattaacatgcaactcacaacgctctgagaagaaagtgaggaagaagtaacatgcttctt 360
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 107 cattagcatgcaactcacaaagccctgagaagaaagtgaggaagaagtaacatgcttctt 48
Query: 361 agacacagcggcaatgaaggcatgaggtgtgcattcccattccaaga 407
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 agacacagcggcaatgaaggcatgaggtgtgcattcccattccaaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space: 564706
Effective search space used: 564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
