Query= MSMg01no277_p19.b1 MSMg01no277_p19.b1 CHROMAT_FILE:
MSMg01no277_p19.b1 PHD_FILE: MSMg01no277_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:12 2005
(298 letters)
>mm_chr4_25663810_25664507
Length = 698
Score = 516 bits (267), Expect = e-151
Identities = 290/299 (96%), Gaps = 3/299 (1%)
Strand = Plus / Plus
Query: 1 tggcaactcgagcttatttatttcttccaaagcttcttttaaacttgtgttccgatgggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tggcaactcgagcttatttatttcttccaaagcttcttttaaacttgtgttttgatgggc 260
Query: 61 atggcttttaagtttgtttcttcatagccaatgttgaaatcctaacttccaagataatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggcttttaagtttgtttcttcatagccaatgttgaaatcctaacttccaagataatac 320
Query: 121 tattataaaacatagactttgggcaaaaacaagggcctccaccaatgtaagtgatgtctt 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 tattataaaacatagactttgggcaaaaacgagggcctccaccaatgtaagtgatgtctt 380
Query: 181 tataagaggccacagaaaaggtaggcagcttcctcttcttcttgttcttttttccctaaa 240
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 381 tataagaggccacagaaaaggtaggcagcttcctcttcttgttcttcttttttccctaaa 440
Query: 241 actgtatcatttttattttttatctaatt---ttttttattagatattttcttcatgta 296
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 441 actgtatcatttttattttttatctagttgttttttttattagatattttcttcatgta 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space: 199121
Effective search space used: 199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no277_p19.g1 MSMg01no277_p19.g1 CHROMAT_FILE:
MSMg01no277_p19.g1 PHD_FILE: MSMg01no277_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:12 2005
(292 letters)
>mm_chr4_25834567_25835257
Length = 691
Score = 456 bits (236), Expect = e-133
Identities = 272/292 (93%), Gaps = 14/292 (4%)
Strand = Plus / Minus
Query: 1 tctagagctgcctgctgcttttatgagtacattgacatattgtatgatacctctatccat 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 596 tctagagctgcctgctgcttttatgagtacattgacatattgtatgatatttctatccat 537
Query: 61 taaaattttaatataactgtgatataaacaaatcaccaatcaatagttggcaatgttttt 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 536 taaaaatttaatataactgtgatataaacaaatcaccaatcaatagttggcaacgttttt 477
Query: 121 aataaaaatatattttaatatatgagattttaaaagattagaaaatattgatagcataaa 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aataaagatatattttaatatatgagattttaaaagattagaaaatattgatagcataaa 417
Query: 181 aatggttggtttatcactaaaatagattaagtgaaaagtactactaataaaaatgataga 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 416 aatggttggtttatcactaaaattgattaagtgaaaagtactactaataaaaatgataga 357
Query: 241 tttttttcccctttgttttttttttttttgctctgacatttgcttgaagatg 292
|||||| ||||||| |||||||||||||||||||||||||
Sbjct: 356 tttttt-ccccttt-------------ttgctctgacatttgcttgaagatg 319
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space: 193006
Effective search space used: 193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
