BAC Information

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BAC

Clone NameMSMg01-278J24
Chromosome4 (Build37)
Map Location 95,090,304 - 95,090,581
singlet/doubletsinglet
Overlap genenone
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
Downstream gene2310009E04Rik, Hook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278J24.T7 (MSMg01no278_j24.b1)MSMg01-278J24.TJ (MSMg01no278_j24.g1)
ACCAG416204AG416205
length734737
length of high quality
(start - end)
316 (46 - 361)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no278_j24.b1 PHD_FILE: MSMg01no278_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:00 2005CHROMAT_FILE: MSMg01no278_j24.g1 PHD_FILE: MSMg01no278_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGATCCATTTAGACTTGAGCTTTGCACAAGGAGATAAGAATGG
ATCAATTCACATTCGTCTACATGATAACTGCCAGTTGTGCCAGCACCATT
TCTTAAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCA
AAGATCAAGTGACCATAGGTGTGTGGATTTATTTCTGGGTCTTCAATTCT
ATTCCATTGATCTACCTGTCTGTTGCTGTACCAGTACCATGCAGCTTTTA
TCACAATTGCTCTGTAGTAGAGCTTTAGGTCAGGCATGGTGATTCCACAA
GAGGTTCTTTTTCTTTGTTCCGAGACCCCGNCACCCTAGGGTTTTTGTTA
TTCAAGATGAATTTGCAAATTGAACAAAAAAAACAATGAAGAATTGAATT
GGAATTTTGATGGGGATTGCACTGAATCTGTAGATTGCTTTCAGCAGGAT
AGACATTTGACTATATTAATCCTGCCAGTCCATGAGCATGGGAGATCTTT
CCATCTTCTGAGATCTTCAATTTCTTTCTTCAGAGACTTGAAGTTCTTAC
CATATAGATCTTTTACTTCCTTAGTTAGAGTCACACCAAGGTATTTTATA
TTATTTGTGACTATTGTGAAGCGTGNTGTTTCCCTAATTTCTTTCTCAGC
CCCTTTATCCTTTGTGTATAGAAAGGCCATTGAT
CCATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAAATGACTGTTTTATCCTCTTCCT
ATACAAAGCTTGAATGTCTAGCCCGATTGGCCACTCAGTTTTTGCAGTTC
TGGGTCATCCTTCTGAAACCTATACAAAGGCTTCCCCAGAGAGGTAAGGG
GGCAGCCCCTGTGAGGAAAATACCCTGGGCTGGGAGTAGGATATTCCAGG
TGCCTGTTTGGCTCTCCTCACATGCAGATCACAATCCCTAAGGATCAAAA
GTACCAGATTCACTGGGAGGCTGAATAAATACACAGTGCATTGAGGAAGA
AATGGTGGATTGAATTGTTACCCGCCGCCCCAGACACAAGGGATAGGCTT
CAGACTGGACAGGTCACCAGCGTCCAAAAACAGTTCTCAGATGGCATGCC
AAATCAACTGAATCAGAAACCGAACACCAGGCTGAACATCTGGTTTTCAG
GAACCTTGAGGAGATTCTGATGCCCTATCTGCACCAGGGAGTGGTTAGAG
CCTTGCCAATCACCCTACAAGTGTGTTTGCAAGAGAAATGTCCCTTTGAA
GCTGGGGGGGGGGGGTTCTTGCCTATGTCCCAGGAACTCAGGGAGTATCC
CATAAAGAGGGACTGACCTGAAGTGGGAAAGGGCAGGGCTCCCAGATACT
CCTACCTCTTGGGCAGACTCTGACTTTCATGAGGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_j24.g1 MSMg01no278_j24.g1 CHROMAT_FILE:
MSMg01no278_j24.g1 PHD_FILE: MSMg01no278_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:00 2005
         (285 letters)



>mm_chr4_95090097_95090781
          Length = 685

 Score =  460 bits (238), Expect = e-134
 Identities = 268/278 (96%)
 Strand = Plus / Minus

                                                                       
Query: 8   actgttttatcctcttcctatacaaagcttgaatgtctagcccgattggccactcagttt 67
           ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 485 actgttttatcctcttcctatacaaagcttgaatgtctagtgggattggccactcagttt 426

                                                                       
Query: 68  ttgcagttctgggtcatccttctgaaacctatacaaaggcttccccagagaggtaagggg 127
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 425 ttgcagttctgggtcatccttctgaaacctatacaaaggcttccccagagaggtgagggg 366

                                                                       
Query: 128 gcagcccctgtgaggaaaataccctgggctgggagtaggatattccaggtgcctgtttgg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 365 gcagcccctgtgaggaaaataccctgggctgggagtaggatattccaggtgcctgttcgg 306

                                                                       
Query: 188 ctctcctcacatgcagatcacaatccctaaggatcaaaagtaccagattcactgggaggc 247
           |||||||||||||||||||||||| ||||||| ||||| |||| || |||||||||||||
Sbjct: 305 ctctcctcacatgcagatcacaattcctaagggtcaaaggtactaggttcactgggaggc 246

                                                 
Query: 248 tgaataaatacacagtgcattgaggaagaaatggtgga 285
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tgaataaatacacagtgcattgaggaagaaatggtgga 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)