BAC Information

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BAC

Clone NameMSMg01-279G13
Chromosome4 (Build37)
Map Location 134,392,106 - 134,392,655
singlet/doubletsinglet
Overlap geneTmem57
Upstream geneRps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1
Downstream geneRhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279G13.T7 (MSMg01no279_g13.b1)MSMg01-279G13.TJ (MSMg01no279_g13.g1)
ACCAG416781AG416782
length758967
length of high quality
(start - end)		554 (46 - 599)---
definitionCHROMAT_FILE: MSMg01no279_g13.b1 PHD_FILE: MSMg01no279_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:59 2005CHROMAT_FILE: MSMg01no279_g13.g1 PHD_FILE: MSMg01no279_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGGTGCCCAACCTCAGTTTCGGCCCAGTTCATGTCCTTGGCTT
AAGAACCATGAACAAGAGCACTCTTTAATGTTGAATTAGCTACTGCTTTT
TAGTATATGTGCTGCTCAAGCAAGCTTATAACCACTGCTTCCCCCTGGTC
TATTCTGAGTGTTTGAAATTTCCTCTTGTTAAATTGCTTTGTATTCAGCA
ATTTTGTTCAACAAAGCTTTTAATAGCATACTTGAAATTAACAAATTCTG
AAATGTGGCTTTTAATTTGGTTTTTTTTTTCTGTCTTTAGGCCTTCTCAG
TATTTTTTGTTTGTGTAGCATTCACTTCAAATATCATATGTCTCCTCTTC
ATTCCCATACAATGGCTTTTTTTCGCTGCTAGCACATATGTATGGGTCCA
GTACGTATGGCACACAGGTGAGTCTTAATGACTTCTTGGTTAGGAATTTT
AGATTCAAGTTAATTATTTAGATTGATATTTTAAGGTTCCTTTCCCCAAT
ATTATCTTAATATGTTGCTTGGCTTGTGGTTGTGGTTTGTTGATTTGTGC
GGTTTTGTTTTGCCTCTGCTCCCCTATTTTTTTNTCCACCCCTCTTTTTT
TTTTTTTTTCTCCTTTTTTTTCCCCTCCCCTTCTCCACTATTTTTTTTCG
TCTCTTATTTGTTCTCCCCTTTTCCTTTTCCTTTCCATTTTCTTCCCTCT
TTTCCCTG

CCCCCCCCCTTTTCCCTTTNNNCCNTTATTCCTTTTCTTTCCCCCCTTTT
TCTCACTAACTCCACTCAATTGCGATGGCCCCCGGTTCTCGTCCTCTTCC
TTCTCCTTTTGTGTTTTCCTTTTTATTTCTTTTTNNNNNNNNCCCTGCTA
TTGCACTANTGGGGNTTAGGNCCCTGGGNCGNGCCCGNCCTTGTGTCCGN
NTCGTAACATTTNTAGGGNTGGACNNACTATAGNATAGGCATCCCGCCGG
GNAATTTCCCCTCCGGGGCCCCACATTACCTTTAGGGAATGGCNTTTCCC
AGNTGGAACAGTTGGCTGTAGCCANCAACTCGCCGAAGGGAAGTGGGCTT
TTGAAAAAGGGGATTTTCCTTTGCGCAGGCCCTTTCCCCCTTCCTTGGAA
AAAAAAAAAGAAAGGCCCCTAAAATTCCCCCCGCCCAAAGGGAAAAACCC
GCGGGTCCCAAAAAAGACATTCTCCCGGGGGCCCCCCTTTTTTTGTTGGA
TTTCGCCGCCAAAAAAACCCCCCCCTCTTTTGGGGAAAAAAAAAAAAAAA
AAAACCCCCCCCCCCGAAGAAGGAAAAAAAAAACACCCGTCTTTTTTTAA
CTCTCTTCTTCGTTGGAAAGTATAAAACCCCCCCCCCTCCCCACCCAGGG
GTGGTGGGGGCGCCCTCCTCCCCCCCCCTCCCTCCCTCGGGGGGGTGGGT
GTGTGGGATCCCCTTTCTTCCACTGGGGGGGGGGGGGAGTAAAACCCTCT
GCGTTCCCCCCCCTCTTCTTTCGTGTGATGGATGAGGGGGTTTCCCCCTC
CCCCCTTTAAATGAGTTGAAAANACCCACCTTTCGCCGCGCCCCCCGCTA
TTAATATCTCATTTATCCTTGTTGGGGTGGGAGGAGAAGAGTATATTTTA
ACTTCCCTTTTCCCCCTGTGCGGGGGATCGGCCTTCTTCCCCCCCTCTCC
TCCTCTTCTATTCACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_g13.b1 MSMg01no279_g13.b1 CHROMAT_FILE:
MSMg01no279_g13.b1 PHD_FILE: MSMg01no279_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:59 2005
         (554 letters)



>mm_chr4_134391902_134392855
          Length = 954

 Score = 1044 bits (540), Expect = 0.0
 Identities = 548/552 (99%), Gaps = 4/552 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcac--tggtgcccaacctcagtttcggcccagttcatgtccttggcttaagaacc 62
           ||||||||  ||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gaattcactgtggt--ccaacctcagtttcggcccagttcatgtccttggcttaagaacc 697

                                                                       
Query: 63  atgaacaagagcactctttaatgttgaattagctactgctttttagtatatgtgctgctc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 atgaacaagagcactctttaatgttgaattagctactgctttttagtatatgtgctgctc 637

                                                                       
Query: 123 aagcaagcttataaccactgcttccccctggtctattctgagtgtttgaaatttcctctt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aagcaagcttataaccactgcttccccctggtctattctgagtgtttgaaatttcctctt 577

                                                                       
Query: 183 gttaaattgctttgtattcagcaattttgttcaacaaagcttttaatagcatacttgaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gttaaattgctttgtattcagcaattttgttcaacaaagcttttaatagcatacttgaaa 517

                                                                       
Query: 243 ttaacaaattctgaaatgtggcttttaatttggttttttttttctgtctttaggccttct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttaacaaattctgaaatgtggcttttaatttggttttttttttctgtctttaggccttct 457

                                                                       
Query: 303 cagtattttttgtttgtgtagcattcacttcaaatatcatatgtctcctcttcattccca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cagtattttttgtttgtgtagcattcacttcaaatatcatatgtctcctcttcattccca 397

                                                                       
Query: 363 tacaatggctttttttcgctgctagcacatatgtatgggtccagtacgtatggcacacag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tacaatggctttttttcgctgctagcacatatgtatgggtccagtacgtatggcacacag 337

                                                                       
Query: 423 gtgagtcttaatgacttcttggttaggaattttagattcaagttaattatttagattgat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtgagtcttaatgacttcttggttaggaattttagattcaagttaattatttagattgat 277

                                                                       
Query: 483 attttaaggttcctttccccaatattatcttaatatgttgcttggcttgtggttgtggtt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 attttaaggttcctttccccaatattatcttaatatgttgcttggcttgtggttgtggtt 217

                       
Query: 543 tgttgatttgtg 554
           ||||||||||||
Sbjct: 216 tgttgatttgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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