BAC Information

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BAC

Clone NameMSMg01-279K18
Chromosome4 (Build37)
Map Location 87,970,044 - 87,970,398
singlet/doubletsinglet
Overlap geneBC057079
Upstream geneMllt3
Downstream genePtplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279K18.T7 (MSMg01no279_k18.b1)MSMg01-279K18.TJ (MSMg01no279_k18.g1)
ACCAG416972AG416973
length742740
length of high quality
(start - end)		354 (381 - 734)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no279_k18.b1 PHD_FILE: MSMg01no279_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:19 2005CHROMAT_FILE: MSMg01no279_k18.g1 PHD_FILE: MSMg01no279_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGTCAGCCTCAACACACTGACAAGAAGAACACTGAATCACTGGGA
AAGACAATAGTTTCAACCCATTCTTAATATTGGCTTTGAAAAGGGAAAGG
ATTCTAGAAAAACGTATATGGAAAGGAGCACATGGAATGTTGAGCTTCAA
AAAGGAAAGCTACTCCTGCCAGGGGGCACATCTGAAAGAGGTCATCAGGA
GGAGCCCCAACCAATCCTCCTGTGGCTCTGGCCACGCTCAGGGTGGATGC
AGGGAACACTACATTGCAGCCTTCCAGCCTAGACTCCCCATGCTTTATGG
AATTATCCCTCTTTCTTAGGACGCCCCGAAGAAGCTGAGTGGATCTCATT
CAAAGCACTCTCCTAAGTGTCCCCTCAGCAACAGCATGATGAAAGCCAGG
CCCTTCTCATTTGTTCTCAAGTTAAAAGGTTTTCCATAATCATCATTAGG
AAACTATTTCATTTCAATACAAAGTTACATATATTGCCTATCTTTGAGGT
TGATGTTGCTAGTCTGAAAAATAAACTCAATTGGCATTTATAAAGTATGA
AACTTATGTCTATTTTGCTAGACCAGTAATAAGTCATCAGGAAACTAAAG
TCAATGAAATAATCCCAAATCACAAGTTGTAACTCTAGTTAACCCACAGC
TGATAGAGCAGGGCCAGCAATCATTGTATTGCAGTGTTTTAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAAAGAAGCTATGTCTGTAAG
ATAGGGCCATAGAGCTGTGCAGAGGTTGGAATGGTATGGGTTTAGAGTCT
AATTACAGTTTATTGTGAGCTCTACATTTCTTGTTCACTTTTGTTTTGGC
TCTAACCTCCAGTGACAGATAAAAACCTTTTGGAATTTATTAACTTTGCA
GATCACCGGCTTCCACCACCTCCAAAGCTAAAAATCTCACCACAGCATCT
GAGGTCTATAGGAGAGATCCCCTTGTCCTGCTAACTGCCTTTCTGATATT
TGTACCAGTGTATTTTAAAAACGACTCCCGCTTTAATTTTCTTGATATTC
TATAAACTGTGAAAATGTTTTCTTGTTGGAGCTTGGAGCTGTTTATTTGG
GAGATCTAAATGTGTATTTCTTGGTCACAGTTATATCATTTTGCTTCAGA
GTCAATCTTGTCTTTTATTCCCTTGAGGTAAGGGCTGTTTCTTCCAATGA
CATTAGCATATTCAACTCAGTGACTGACTGACACATTACATGATATGCAG
GTCAGAAGCTTCATGTGTCCAAATAATGGCGCCATTTCTGTGGTATCTCT
ACTGTGAACCATCTCAGTTACAAGAATATGCCAAGCTTCGACTGTCGCTG
CTCANAGTCTTACTTCAGCCCAGAGGTGTCTGTGAGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_k18.b1 MSMg01no279_k18.b1 CHROMAT_FILE:
MSMg01no279_k18.b1 PHD_FILE: MSMg01no279_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:19 2005
         (354 letters)



>mm_chr4_87969844_87970598
          Length = 755

 Score =  627 bits (324), Expect = 0.0
 Identities = 348/356 (97%), Gaps = 3/356 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagctgagtggatctcattcaaagcactctcct-aagtgtcccctcagcaacagcatga 59
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 555 gaagctgagtggatctcattcaaagcactctcctgaa-tgtcccctcagcaacagcatga 497

                                                                       
Query: 60  tgaaagccaggcccttctcatttg-ttctcaagttaaaaggttttccataatcatcatta 118
           ||||||||||||||||||||||||  ||||| ||||||||| ||||||||||||||||||
Sbjct: 496 tgaaagccaggcccttctcatttgcatctcaggttaaaaggctttccataatcatcatta 437

                                                                       
Query: 119 ggaaactatttcatttcaatacaaagttacatatattgcctatctttgaggttgatgttg 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 436 ggaaactatttcatttcaatacaaagttacatatattgcctatctttgaggtcgatgttg 377

                                                                       
Query: 179 ctagtctgaaaaataaactcaattggcatttataaagtatgaaacttatgtctattttgc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ctagtctgaaaaataaactcaattggcatttataaagtatgaaacttatgtctattttgc 317

                                                                       
Query: 239 tagaccagtaataagtcatcaggaaactaaagtcaatgaaataatcccaaatcacaagtt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tagaccagtaataagtcatcaggaaactaaagtcaatgaaataatcccaaatcacaagtt 257

                                                                   
Query: 299 gtaactctagttaacccacagctgatagagcagggccagcaatcattgtattgcag 354
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtaattctagttaacccacagctgatagagcagggccagcaatcattgtattgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 755
Length adjustment: 9
Effective length of query: 345
Effective length of database: 746
Effective search space:   257370
Effective search space used:   257370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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