BAC Information

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BAC

Clone NameMSMg01-279L06
Chromosome4 (Build37)
Map Location 6,308,222 - 6,308,512
singlet/doubletsinglet
Overlap geneSdcbp
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1
Downstream geneNsmaf, LOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279L06.T7 (MSMg01no279_l06.b1)MSMg01-279L06.TJ (MSMg01no279_l06.g1)
ACCAG416992AG416993
length758750
length of high quality
(start - end)
326 (45 - 370)293 (76 - 368)
definitionCHROMAT_FILE: MSMg01no279_l06.b1 PHD_FILE: MSMg01no279_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:22 2005CHROMAT_FILE: MSMg01no279_l06.g1 PHD_FILE: MSMg01no279_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCTCTTTAATCCATTTTTAAATAGGGTTATTTGGTTTT
CTGGAGTCAAACTTCACATGAAATTCAAGAAGGAAGACAAAAGTGTGGGT
ACTTCGCTCCTTCATAGAAGGGGGAACAAAATACCCATAGGAGGAGTTAC
AGAGACAAAATGTGGAGCAGAGACTGAAGGAAAGGCCATCCAGAGACTGC
CCCACCTGGGGATCCATCCCATATATAGTCACCAAACCCAGACGTTATTG
CGGATGCCAACAGGTATTTGCTGACAGGAGCCTGATATAGCTGTCTTCTG
AGTGGCTCTACCAGTGCTTGACTAATATCGAGCGCCGCGATGCTCTCAGC
CAACCATTGGACTGAGCACAGGGTCCCCAATGAAGGAGCTAGAGAAAGAG
CTCAAGGAGCTGAAGAGGTTTGCAGATCAAGAGAAGGAACAACAATATGA
AACAAACAGTACCCCCAGAACTCAGGGACTAAACCACCAACCAAAGAGTA
CACATGGTGGGACTCATGGCTCTAGCTGCATTTGTAGCAGAGGATGTCCT
AGTTGGTCATCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGCTCTATG
CCCCAGTGTAGGGGAAAGCCAGGGGCAGAAGTGGAAGTGGGTAGGTTCAT
GAGCAGGGGAAAGGGAAAGGATAAGGGGAAACCAGAAAAGGGAATTACAT
TTGTAATG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAACCTCAGTGCAGTTATACAGCC
AGAAAGGATAAAAGTAACTCAGAAACCCGGCAGGGGCCGGGTTTGGGAAG
GATAAAATGCACAAGACAAAGACCTAATCAATTCACCAGTGGATGACAAT
GTTCAGAAATACTTCTAGAAAGAATTTTATAATCTTAGGACAGTTCAACC
CTAAAGTTATGAACATGTGAGTTTCCTATAAATGGGTTTACACCTATGTA
TAAAGGACATTTTGTGGGACTTAAGATCAGACTGTACATACCCCTTGTGC
TGGTGCTCCAGAGACCTTTGTCATGCTCTCACCCCCCCAGCTTCATTTAA
AGACAGTCCCATGTATTGAGAGAGCTCTGGATACAGATTAGGATACAGAT
CTAATATAAACAAAGAAAAAGGCATTGGCAGAATATTCAAAATAACAACT
TAGTATGAACTTGCTGTGTTCAATTTAAAAAAAAAATAAGGCACAAAGAT
TTAGATGCATAAAATGGAAGGATATCTTCCCATCTCTGACACAATTATAA
TGAAAAAATCCACAACCACTTGAATGCAAAAGCCCTAACCTCTGAAATCC
ATCCGAAGCCGTCTTATCTTTCTAACCCAGTGAGTCACCGTCTGCGGCCA
TGGTGCACTTCAGGACCCTCCTTCGACCACCCTATTGTGCTAGTGTCTCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_l06.g1 MSMg01no279_l06.g1 CHROMAT_FILE:
MSMg01no279_l06.g1 PHD_FILE: MSMg01no279_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:22 2005
         (293 letters)



>mm_chr4_6308022_6308714
          Length = 693

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaacctcagtgcagttatacagccagaaaggataaaagtaactcagaaacccggcaggg 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 491 caaacctcagtgcagttatacagctagaaaggataaaagtaactcagaaacccggcaggg 432

                                                                       
Query: 61  gccgggtttgggaaggataaaatgcacaagacaaagacctaatcaattcaccagtggatg 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gccgggttagggaaggataaaatgcacaagacaaagacctaatcaattcaccagtggatg 372

                                                                       
Query: 121 acaatgttcagaaatacttctagaaagaattttataatcttaggacagttcaaccctaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acaatgttcagaaatacttctagaaagaattttataatcttaggacagttcaaccctaaa 312

                                                                       
Query: 181 gttatgaacatgtgagtttcctataaatgggtttacacctatgtataaaggacattttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gttatgaacatgtgagtttcctataaatgggtttacacctatgtataaaggacattttgt 252

                                                              
Query: 241 gggacttaagatcagactgtacataccccttgtgctggtgctccagagacc 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gggacttaagatcagactgtacataccccttgtgctggtgctccagagacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)