BAC Information

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BAC

Clone NameMSMg01-279L08
Chromosome4 (Build37)
Map Location 37,507,353 - 37,507,671
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042132, LOC545600, LOC621458
Downstream geneLOC277771, LOC100039448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279L08.T7 (MSMg01no279_l08.b1)MSMg01-279L08.TJ (MSMg01no279_l08.g1)
ACCAG416996AG416997
length753855
length of high quality
(start - end)
327 (46 - 372)150 (77 - 226)
definitionCHROMAT_FILE: MSMg01no279_l08.b1 PHD_FILE: MSMg01no279_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:22 2005CHROMAT_FILE: MSMg01no279_l08.g1 PHD_FILE: MSMg01no279_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCAGTCAGTGTCTGATATTAGGATTTGCAGTTGTCTGTTGCCAT
GGAGACTGTTTCAGCTACTTGCCCACAGGAGGGAGCCCTCTACCTGTTAA
AAGGTAGGCTAATAAGAGCACTGGTGTTCTGGGAGCTAACAATGGAGATG
GAACCATTAACAAGAGAGACAGGAGACTTTTTGTTTCCTCATGGATGTGT
GAGTAGAACATTTATCATATTTTTTGGTCCTAACTAAGAAGCACACTCAG
TAGACACTACATGGCACAACAGGAACTGTGGCCTGTAGATCATTGACCAA
TACTCCCCCACCCCTTTTTATAGCCTATTTGCTGCGCAATCTATATTCAT
AATGCATTTCAATAAGACTTTGAGGAACCTAGGCATCAACTAAAGCAGGG
TGGTTGCTATAGGACAGAACAAGAGTTAGAATAAATGATGATGAGTGTAA
CTAATATGTAAAGATAACTTGATAGTGTTTGCTTGGTTTCTCATAGACTT
TATCTGCTTGAGTAGTCAAATCTTTGAAACAAAGGAAACTAGACATCTCT
TTGTAGGCTTAATTTTCTTGTGTGCCACAGCTAAACATTATTTTATTCAG
TATTAAAAACTGAATCCTAAAAAGGGTGCCTGGAAGTGCTCCTTTTACAT
GTACAACCAACCCTGTCAGCTTCACAGAGTACTGTGTATACTCTGAGATC
TTT
ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTTTTAATCCCAAGTTGTGCT
TTTCTCTTTTTCTAGGGAAATTAAGACAGTTCATGTTGGGAGTTATGAAT
GAGCAGTATTTGTTGATTACTGCTGATTTGTTGATTAGTTGAGGGGGTTG
TTTTTGTTCTTGTTTGGGTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTGTTTTTTTTTGTTTTTNTTTTTTTTTTTTTTTTTTTTA
TTTTTTTTTNNTTTTATTNTTTTTGGTTTTTTTTTTTTTTTNNGGAAAAA
AAAGGGGGAAAAAAAAAAAGAAAATATTTGAGGTGGGGTTCCCAAGAAAC
AAAAACCCCCGGTATTTTTATTTTTTGTGTTAAATTTTTGGTTGGTTNTT
TTTTAAAAAAAAAAAAAAAAAAAAAATTTGTGGGGGGGGGGGGGGAATTT
AGTTATTTTAACCGTGGGAAATAAATTTTTATCGTTTTTGTGTGTAATTA
TGTGTTTTTATTTTTATTGGTTGTATTATATTTTTTTCCCTTGCTTATTT
ATTTTATATTTCTCTTCTTGTTTCTTCTTGCCTTACACTCTTACCTTTCA
TCTTCTTACTTTTCATAACCATCATCTCTCTCCTTACTATAATCCATTTT
ATTTTTTTTGTTTCTCGTTTTATTTTTTTGCATTTTTTTGTTGTTACTGT
CTATATTGTTTCCCTTCTTTTTATTTACCTCCTCAGAGTTTCTTCTCATG
TTTTTTTCATTCTCACCGTGTCATCTTCTTCTCCCCTATACTCTCTTATC
TTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_l08.b1 MSMg01no279_l08.b1 CHROMAT_FILE:
MSMg01no279_l08.b1 PHD_FILE: MSMg01no279_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:22 2005
         (327 letters)



>mm_chr4_37507147_37507873
          Length = 727

 Score =  609 bits (315), Expect = e-179
 Identities = 318/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   attcctcagtcagtgtctgatattaggatttgcagttgtctgttgccatggagactgttt 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attcctcagtcagtgtttgatattaggatttgcagttgtctgttgccatggagactgttt 266

                                                                       
Query: 67  cagctacttgcccacaggagggagccctctacctgttaaaaggtaggctaataagagcac 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cagctacttgcccacaggagggagccctctacctgttaaaaggtaggctaataagagcac 326

                                                                       
Query: 127 tggtgttctgggagctaacaatggagatggaaccattaacaagagagacaggagactttt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tggtgttctgggagctaacaatggagatggaaccattaacaagagagacaggagactttt 386

                                                                       
Query: 187 tgtttcctcatggatgtgtgagtagaacatttatcatattttttggtcctaactaagaag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgtttcctcatggatgtgtgagtagaacatttatcatattttttggtcctaactaagaag 446

                                                                       
Query: 247 cacactcagtagacactacatggcacaacaggaactgtggcctgtagatcattgaccaat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cacactcagtagacactacatggcacaacaggaactgtggcctgtagatcattgaccaat 506

                              
Query: 307 actcccccaccccttttta 325
           |||||||||||||||||||
Sbjct: 507 actcccccaccccttttta 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)