Query= MSMg01no279_m22.b1 MSMg01no279_m22.b1 CHROMAT_FILE:
MSMg01no279_m22.b1 PHD_FILE: MSMg01no279_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:30 2005
(316 letters)
>mm_chr4_4801972_4802687
Length = 716
Score = 594 bits (307), Expect = e-174
Identities = 310/311 (99%)
Strand = Plus / Minus
Query: 5 gaattctctgtgtggccatggttctgaaacttcccagtgcaatgagctttttttagaagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctctgtgtggccatggttctgaaacttcccagtgcaatgagctttttttagaagt 456
Query: 65 ttgtaggaatatcaaggtctatgttccactacaagacatttgcatttagttagaagtcca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttgtaggaatatcaaggtctatgttccactacaagacatttgcatttagttagaagtcca 396
Query: 125 aacactgaaactttttaaaagcagaattgagaacaagcttatcaaagcccagcacaaaca 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aacactgaaacttttaaaaagcagaattgagaacaagcttatcaaagcccagcacaaaca 336
Query: 185 ctatacaatatgaatccccatcccatccacctagatgcatgcatattatcaggagtctgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ctatacaatatgaatccccatcccatccacctagatgcatgcatattatcaggagtctgc 276
Query: 245 ttacctatgaaaagcaaggccttcagaaacagtttggtttacagaacagaggagtggcat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttacctatgaaaagcaaggccttcagaaacagtttggtttacagaacagaggagtggcat 216
Query: 305 tagcggtgata 315
|||||||||||
Sbjct: 215 tagcggtgata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no279_m22.g1 MSMg01no279_m22.g1 CHROMAT_FILE:
MSMg01no279_m22.g1 PHD_FILE: MSMg01no279_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:30 2005
(288 letters)
>mm_chr4_4651160_4651848
Length = 689
Score = 505 bits (261), Expect = e-147
Identities = 282/289 (97%), Gaps = 1/289 (0%)
Strand = Plus / Plus
Query: 1 ttttaataaaacttgaatctgtgtggaagccatttgggcattccagaatggtattcctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaataaaacttgaatctgtgtggaagccatttgggcattccagaatggtattcctgg 260
Query: 61 taaaagctacagaacagagtcaaa-ggggaaacaaaataatcctagaaaatatgacagag 119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaagctacagaacagagtcaaaaggggaaacaaaataatcctagaaaatatgacagag 320
Query: 120 tctacccacagcaatgtgtttgtgcttccaaagaagcaaactttgagaagtaatattaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctacccacagcaatgtgtttgtgcttccaaagaagcaaactttgagaagtaatattaaa 380
Query: 180 agtaagtctatattaatgctttattaatatataaaatttagccgagcgtggtgacgcacg 239
||||||||||||||||||||||||||| |||||||||||||||| | |||||| ||||||
Sbjct: 381 agtaagtctatattaatgctttattaaaatataaaatttagccgggtgtggtggcgcacg 440
Query: 240 cctttaatcccagcactcgggaggcagaggcaggcggatttctgagttc 288
||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 441 cctttaatcccagcactggggaggcagaggcaggcagatttctgagttc 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 689
Length adjustment: 9
Effective length of query: 279
Effective length of database: 680
Effective search space: 189720
Effective search space used: 189720
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
