Query= MSMg01no280_a13.b1 MSMg01no280_a13.b1 CHROMAT_FILE:
MSMg01no280_a13.b1 PHD_FILE: MSMg01no280_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:47 2005
(707 letters)
>mm_chr4_68144308_68145413
Length = 1106
Score = 1319 bits (682), Expect = 0.0
Identities = 698/704 (99%), Gaps = 3/704 (0%)
Strand = Plus / Plus
Query: 5 gaattccatatgga-tttcctcaatgtgaacattttctactctatcttcttgtttgatgg 63
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatatggaatttc-tcaatgtgaacattttctactctatcttcttgtttgatgg 263
Query: 64 tactccaccacacctaagaatatattttctatacattcttttattcattcatataaatat 123
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tactccaccgcacctaagaatatattttctatacattcttttattcattcatataaatat 323
Query: 124 tcattcacttatctttattttgtatgtacgaccatggattatagacttcataagaccaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcattcacttatctttattttgtatgtacgaccatggattatagacttcataagaccaat 383
Query: 184 gtccttaattaccttattattaaagcttctaggactggatatatattgaagacttggaac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtccttaattaccttattattaaagcttctaggactggatatatattgaagacttggaac 443
Query: 244 tcaaaagtacataatctttataaataatgattaatgtaactaaagtattaagaccaagaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcaaaagtacataatctttataaataatgattaatgtaactaaagtattaagaccaagaa 503
Query: 304 aatattcaatatgtaatacaaatatgatataaatgaataccccatttatttttttctagt 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 504 aatattcaatatgtaatacaaatatgatataaatgaataccccatttatttttt-ctagt 562
Query: 364 accagatcataattgtaaagaacataatcttgtaaagacagaatcaagaatttattctct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 accagatcataattgtaaagaacataatcttgtaaagacagaatcaagaatttattctct 622
Query: 424 tattgaagagattgaaaaattttggtaaaatgaccaaactgacatgtaaaatatctgttt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tattgaagagattgaaaaattttggtaaaatgaccaaactgacatgtaaaatatctgttt 682
Query: 484 tcttttatttacattgtgctagtcacatcttcattctacgtctagttcttgaaaaaagaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcttttatttacattgtgctagtcacatcttcattctacgtctagttcttgaaaaaagaa 742
Query: 544 aggagaaaagtcttcattttggcccttatgttcagaggtttcattaggttcattgtctct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aggagaaaagtcttcattttggcccttatgttcagaggtttcattaggttcattgtctct 802
Query: 604 gagaccatagtgaggttttccaatatgtagaagggcaaggctgaggaaagctacttagta 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gagaccatagtgaggttttccaatatgtagaagggcaaggctgaggaaagctacttagta 862
Query: 664 catagcatctatganacaaataanaagaaggaagaggctgctaa 707
|||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 863 catagcatctatgaaacaaataaaaagaaggaagaggctgctaa 906
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1106
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1096
Effective search space: 763912
Effective search space used: 763912
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no280_a13.g1 MSMg01no280_a13.g1 CHROMAT_FILE:
MSMg01no280_a13.g1 PHD_FILE: MSMg01no280_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:47 2005
(675 letters)
>mm_chr4_68268168_68269242
Length = 1075
Score = 547 bits (283), Expect = e-160
Identities = 308/323 (95%), Gaps = 12/323 (3%)
Strand = Plus / Minus
Query: 353 aactaatacctatactttctattaattaattaattaattaattaattaattaattaatta 412
|||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 1075 aactaatacctatactttctattaattaattaattaattaat-----------tt-attt 1028
Query: 413 atttctttatttaggtttttcaagacagggtttctctgtatagtcctggctgtcctgaaa 472
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 atttatttatttaggtttttcaagacagggtttctctgtatagtcctggctgtcctgaaa 968
Query: 473 ctcactctgtagaccaggctggcctagaactcagaaatctgcctgcttcggcctcccaaa 532
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 967 ctcactctgtagaccaggctggcctagaactcagaaatccgcctgcttcggcctcccaaa 908
Query: 533 tgctggagtaaaggcatgtgccaccactgccctgttcaagatctatacatttttttttct 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 tgctggagtaaaggcatgtgccaccactgccctgttcaagatctatacatttttttttct 848
Query: 593 ttagatttacatatactttactgtttcggtggttttttctattgaatcacattgctgttc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ttagatttacatatactttactgtttcggtggttttttctattgaatcacattgctgttc 788
Query: 653 aatcacatttctatctttaaagg 675
|||||||||||||||||||||||
Sbjct: 787 aatcacatttctatctttaaagg 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
