BAC Information

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BAC

Clone NameMSMg01-280D16
Chromosome4 (Build37)
Map Location 97,158,311 - 97,158,627
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280D16.T7 (MSMg01no280_d16.b1)MSMg01-280D16.TJ (MSMg01no280_d16.g1)
ACCAG417374AG417375
length756756
length of high quality
(start - end)
320 (45 - 364)232 (130 - 361)
definitionCHROMAT_FILE: MSMg01no280_d16.b1 PHD_FILE: MSMg01no280_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:01 2005CHROMAT_FILE: MSMg01no280_d16.g1 PHD_FILE: MSMg01no280_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTAGGACTAGCTTCTGTGTTAAGTAAGAATGTGATTATATTTTTG
CCTGCCACTAATAATTTACTTCTTATATCTTATTTATGTATATTTTTCAT
TAAAAATCATTAGACTGAAATTAGAGACACTGATAAGTAGTATATACCTT
GTCCTTGTCAAAGATCTCACACACAAAAATATATTAGCCTTGCAGTCATT
TGGAAAAGCAAGCTTGCAAGTCATAGCTGGCTGTGTGCCTGATAATGAAC
ACTGAGATTCTAATCAGGTTTTTCTCTGGGCTGATAATAATATTGCATCA
TGGTCCCACTACTGTTTCTGTATACGCACACCCCCTATTTTGCTTTTTGC
TAAGTATCCTCTGGGCCTTAGGCACATTATTTGACTATATTGATTTTTAC
ATTTTGAGAACTGTGAATATAGAGGTTGGGTTTGATTAGAGCTAGAACAA
AGGTCAGCCAAGTTTCTGTATAGAGTATCTGAAAGTAAACACTGTAGGCT
TTCAGCCTGTGTTGTGTCTGCAGCAACTAAAGGAATCATAGATAAGAGTA
GGCAAATAGTTATGTCAGCATTTCAGGAAAATGTATATCCCTCGGTGGCT
GCTCACTTGAACTATTGGCCATGCGGATACCCTGAGTGTTCTTTTTTGTA
AGAATCAGGACCTCATACTTCAATGCCCTGGCGACATAGAGAAGATCCTA
TAATAN
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAATAGATCCGTTGCATTTGTGTGTG
TGTGCATGTGTGTGTGTGTTTGTCCGAGAGAGAGAGCCTGCACAAAATTG
AAGTCCAAGTGAATCAATAAGACTTGAATATAAAGCCAGCCACACTAAAT
CTGATAAGAAGAGAAAATGGGGAACAGACTTGAAAGCACTGGCACGGGAG
AAAGCTTCCTAAATAGAACACCAACAGCTTGAGCACTAAGATCAACAACT
AAGAAATAGGAAACAGAAAACTTTCTGTATTGCTATAGGACACTGGCTAT
AGGACAAAATGCCTTTTCATAGATCTGCAACANATCCCACCAACTCCACA
TCTGTCAGAAGGTTAATATTCAAGATATACAAAAAAAAAAAGAANCTAGA
CGTGCGCAAGACAAATATCCCAATTAAAAATGGGATACAGCTCTATACAG
AGAATTCTGGAAGAAGAATCTTGAATGGAGCACTTAAAGAAATGTTCAAC
ATTCTTGCCAATCAGAGAATTGCAAATAAAAATGACTCTGAGATTCCATC
TTATACAGTCAGAATGACTAAGATAAAAAGTTCAAGCATACTCAAGAATA
CTCCATTGCTGTTGGGAGTGCATACCTATGCAACCACTTTGGAAATTAAT
TTGGTGATTTCTCAGAAAGTTGCCAATAGATCTACATCAAGACCCAGTTA
TACCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_d16.b1 MSMg01no280_d16.b1 CHROMAT_FILE:
MSMg01no280_d16.b1 PHD_FILE: MSMg01no280_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:01 2005
         (320 letters)



>mm_chr4_97158108_97158827
          Length = 720

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctaggactagcttctgtgttaagtaagaatgtgattatatttttgcctgcca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggaattctctaggactagcttctgtgttaagtaagaatgtgattatatttttgcctgcca 461

                                                                       
Query: 64  ctaataatttacttcttatatcttatttatgtatatttttcattaaaaatcattagactg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctaataatttacttcttatatcttatttatgtatatttttcattaaaaatcattagactg 401

                                                                       
Query: 124 aaattagagacactgataagtagtatataccttgtccttgtcaaagatctcacacacaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aaattagagacactgataagtagtatataccttgtccttgtcaaagatctcacacacaaa 341

                                                                       
Query: 184 aatatattagccttgcagtcatttggaaaagcaagcttgcaagtcatagctggctgtgtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aatatattagccttgcagtcatttggaaaagcaagcttgcaagtcatagctggctgtgtg 281

                                                                       
Query: 244 cctgataatgaacactgagattctaatcaggtttttctctgggctgataataatattgca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cctgataatgaacactgagattctaatcaggtttttctctgggctgataataatattgca 221

                            
Query: 304 tcatggtcccactactg 320
           |||||||||||||||||
Sbjct: 220 tcatggtcccactactg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)