TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCTGAGGCTCTTTCAAAGAAACATGTAACAATAAATTGCTGAAATAT
ATTCAGTTTCTTTCAGTCTCAGAAACTGCATGGCATATAGCTTTCTCCTT
AATGTATGCAAAAGGAAAAATAACACCATGATAGTTATCACTAGCGATAG
GTCCACAATATGCTGAAACGTCCACACCTAATCTTCATTTGTAGTCTACT
GACCATTATATTATTAACAGGTATGTCAAAATTGAGTGCAGAGCATAAAA
TAGATTTTTCATTTTATTTGCATTCTGAAGTTTGTACATAGTTCATTATA
TGGAAAATAAGCACCAACACTGTAATTACCTGGACCCGTATTTCAGAGGC
TGTATGTTATCTAAAGTAGGAGACTGTTCATACTGATGTGGCAATTCATT
TCTATTAATTAAAATAATATTTTTTGTTGATTTTTTTGTTTTGTTTTGAT
TTTGCCAAATCGGATGATGCCAAACTAGAGTTTGGGATGCAAAATGTCCT
ATTTGTGTCAGCTATATGATATCTTTGCCTGCAAGTTACAAAAGTAACTT
CTTGCATACCAAAGAAGATGGAGTAATGTGTTTCAATGAATTTTTTATTA
CATAAATTTGTAAAATTAGATTTAATAAATTCTACAATTAAGCTGTTTAA
TACAAAAAACAGTCAGCCATTATGAATATTTGAATTTAACCAAAATTAAA
N

CCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACACCCTTCATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCATTTTCTTTTAATTGGGTTAATTT
GTTTTTTGTTGTACATTAACCCTCTACCAGATGTAGGATTGGTAAGGGTA
TTTTCCAATCTGCTGGTTGCCTTGGAGTCTAATTTTCGAGTCCTATTTAT
ATTTTGTACATTAACCCTCTACCAGATGTAGGATTGGTAAGGGTATTTTC
CAATCTGCTGGTTGCCATTTGGTCTTATTGACAGCGTCCTTTACCTTACA
GACACCTTTGTTTCATGAGATCCTATTTATCACTTCTTGGTCTTAGAGTC
TGAGTCATTGGTGGAAATTTCCCTATACCAATGGATTCAAGGCCCTTTTC
CACTCTATCTTCTATTAGATTCAGTGTATCTGATTATATGTTGAAGTCCT
CGATCCACTTGGACTTGATACAAATTGATGCATAGTTTGCTCTTTAATTA
AGCATTTAAAAAATTTACTGTTTGAGAATTTCAAACATGTATACAGTATA
ATGAAATATAATTAATATCTGCCAACTCTCATTTTAGAATGAAAGCACAA
TAGTTATACAATAGTACACTAATGATTATAATTTAAATCACTAAGATCTT
TA

Query= MSMg01no280_d23.b1 MSMg01no280_d23.b1 CHROMAT_FILE:
MSMg01no280_d23.b1 PHD_FILE: MSMg01no280_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:02 2005
         (707 letters)



>mm_chr4_27355744_27356850
          Length = 1107

 Score = 1021 bits (528), Expect = 0.0
 Identities = 589/612 (96%), Gaps = 12/612 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctgaggctc-tttcaaagaaacatgtaacaataaattgctgaaatatattcagtt 64
           |||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 608 gaattctgaggctcattt-aaagaaacatttaacaataaattgctgaaatatattcagtt 550

                                                                       
Query: 65  tctttcagtctcagaaactgcatggcatatagctttctccttaatgtatgcaaaaggaaa 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tctttcagtctcagaaaatgcatggcatatagctttctccttaatgtatgcaaaaggaaa 490

                                                                       
Query: 125 aataacaccatgatagttatcactagcgataggtccacaatatgctgaaacgtccacacc 184
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 489 aataacaccttgatagttatcactagcgataggtccacaatgtgctgaaacgtccacacc 430

                                                                       
Query: 185 taatcttcatttg-tagtctactgaccattatattattaacaggtatgtcaaaattgagt 243
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 taatcttcatttgat-gtctactgaccattatattattaacaggtatgtcaaaattgagt 371

                                                                       
Query: 244 gcagagcataaaatagatttttcattttatttgcattctgaagtttgtacatagttcatt 303
           |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 370 gcagagcataaactagatttttccttttatttgcattctgaagtttgtacatagttcatt 311

                                                                       
Query: 304 atatggaaaataagcaccaacactgtaattacctggacccgtatttcagaggctgtatgt 363
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 310 atatggaaaataagcaccaacactgtaattacctgaacctgtatttcagaggctgtatgt 251

                                                                       
Query: 364 tatctaaagtaggagactgttcatactgatgtggcaattcatttctattaattaaaataa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tatctaaagtaggagactgttcatactgatgtggcaattcatttctattaattaaaataa 191

                                                                       
Query: 424 tattttttgttgattt-----ttttgttttgttttgattttgccaaatc-ggatgatgcc 477
           || |||||||||||||     ||||||||||||||| |||||||||||| || |||||||
Sbjct: 190 ta-tttttgttgatttttttgttttgttttgttttgtttttgccaaatctgg-tgatgcc 133

                                                                       
Query: 478 aaactagagtttgggatgcaaaatgtcctatttgtgtcagctatatgatatctttgcctg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 132 aaactagagtttgggatgcaaaatgtcctatttgtgtcagctatatgatctctttgcctg 73

                                                                       
Query: 538 caagttacaaaagtaacttcttgcataccaaagaagatggagtaatgtgtttcaatgaat 597
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  caagttacaagagtaacttcttgcataccaaagaagatggagtaatgtgtttcaatgaat 13

                       
Query: 598 tttttattacat 609
           ||||||||||||
Sbjct: 12  tttttattacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space:   764609
Effective search space used:   764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)