BAC Information

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BAC

Clone NameMSMg01-280J13
Chromosome4 (Build37)
Map Location 17,877,578 - 17,877,800
singlet/doubletsinglet
Overlap geneMmp16
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280J13.T7 (MSMg01no280_j13.b1)MSMg01-280J13.TJ (MSMg01no280_j13.g1)
ACCAG417648AG417649
length711774
length of high quality
(start - end)
229 (47 - 275)203 (168 - 370)
definitionCHROMAT_FILE: MSMg01no280_j13.b1 PHD_FILE: MSMg01no280_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:28 2005CHROMAT_FILE: MSMg01no280_j13.g1 PHD_FILE: MSMg01no280_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCTGTAAGTAACAGTAAAGTTATATGGATCCAAGAGGTAATAT
TTGGGAAATATATATACATACAAATACCGCATGTTTACATAATAATTACA
TAAAAAGAGACAATGTGTTTGAACAAGAGTTCATAGGGGTGTGACAGGGT
TCCAAGAGAGATAGGTGAAAAAAAACATTGTAATTAAATTATAACCTCAA
AATTAAAAATAAACAAAAAAATAAATTTGGAGATAATCTTTTAAAATTCA
ATTTTTCAAATAAATCCTTTGTTTTCCCAAAGGGGTTTAACCCCCTAAGG
TTACCAAAAGGCCGGCCCCGAAAAAAAAAAAATTTGTTTTTCCCCGGCGA
AAAAAAAAATTTTTTTTTTTGTGAAAAAATTTTTTGGGCGCCAACTTTTT
TTTTTAATAAAGCGCTCCCCCCAAAAAAAAAAAAATTTTTGGTGGGTGCG
GAAATAAAATATTAATTTTTTTTGGTGGTGTTTGTCCTATACTCCCTCCT
TTTTTTCCCTTCCGCTTTTTCTTGTCATTATCCTTTCTTTTTCCCCTTTC
TATCATTCTTTTATTTTTCCATTTCCTCCCTACTTATTCTTTTTCTCTCC
TCTTCTCTTTCCTCTTTCCTCCTTTTCTTTTTTTTCCTCTCTTTTTCTCT
TCCTATAAATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCAGTGCGGATCTTTCTTTT
TTTCCTGTTCTATTACTAATATACCGCACCCCTGTAAACCACTTGGATTA
CTGTCAACTGAACAATAGATACAGATGTGGTACCTTTATACAATGGAGTA
TTACTCGCTTTTACAAAAAATGACATAATAAAATTTCCAGGCAATTAATG
TAACTAGAAAAAAATCATCCTGAGTAAGGTGATCCAGTTCCAGAAGGATT
GGTATGGTTTTTATTGCTTATATCTGAATATTAGCTATTAAGTAAATGAT
AGCCAAGTTACAATCTGTGGATCTATAGGTAGGCATACCGGAAGGGACTA
GGAGAGATACATGGATATTTCTGGCATGGGGAGATATAATTGATTTCATG
GGTAGACCAGGCACAGGGAAGAGATATGGAAATGTGAAAAGCAGGAGGAG
AATGGAAGGGGAAATTGAGTTGATGAAGGGAATGAGAAAAGAGAAAGTTA
TAATTAAGGAACATTGGAAGAGTGATATGGAAACCTAGTAGAGTGGAAAC
CTGCTAAAGTATATTAATGAAGCTTACAAATAATGGGGGACACAGAGTCC
CATCTGTAATCTCTTGTCACTAAACATAGCACTCAGTACTGGGACTAGGT
TATGCACAATTGAGTTGTTAGACATAAGAATCCCATGGAAATCCCCAAAC
AGCTCACAATGTTGCCAAGAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_j13.b1 MSMg01no280_j13.b1 CHROMAT_FILE:
MSMg01no280_j13.b1 PHD_FILE: MSMg01no280_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:28 2005
         (229 letters)



>mm_chr4_17877374_17878000
          Length = 627

 Score =  404 bits (209), Expect = e-117
 Identities = 221/225 (98%), Gaps = 2/225 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttctgtaagtaacagtaaagttatatggatccaagaggtaatatttgggaaata 64
           |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 427 gaattcttctgtaagtaatagtaaagttatatggatccaagaggtaatattt-ggaaata 369

                                                                       
Query: 65  tatatacatacaaataccgcatgtttacataataattacataaaaagagacaatgtgttt 124
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tatatacatacaaatacag-atgtttacataataattacataaaaagagacaatgtgttt 310

                                                                       
Query: 125 gaacaagagttcataggggtgtgacagggttccaagagagataggtgaaaaaaaacattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaacaagagttcataggggtgtgacagggttccaagagagataggtgaaaaaaaacattg 250

                                                        
Query: 185 taattaaattataacctcaaaattaaaaataaacaaaaaaataaa 229
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 taattaaattataacctcaaaattaaaaataaacaaaaaaataaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 627
Length adjustment: 9
Effective length of query: 220
Effective length of database: 618
Effective search space:   135960
Effective search space used:   135960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)