Query= MSMg01no280_l04.b1 MSMg01no280_l04.b1 CHROMAT_FILE:
MSMg01no280_l04.b1 PHD_FILE: MSMg01no280_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:36 2005
(338 letters)
>mm_chr4_31319564_31320300
Length = 737
Score = 646 bits (334), Expect = 0.0
Identities = 337/338 (99%), Gaps = 1/338 (0%)
Strand = Plus / Minus
Query: 1 cacttgagcttcaaagtccagccacaatgagacacagcctcgcaatacagtagaatccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cacttgagcttcaaagtccagccacaatgagacacagcctcgcaatacagtagaatccgc 478
Query: 61 atgtgaattttaaaagaaatgaattacaaataaatgtcttttaacttaatatatttttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 atgtgaattttaaaagaaatgaattacaaataaatgtcttttaacttaatatatttttgt 418
Query: 121 gtgtggcatggcagaaagaactgtgacaaaatccagactatacagccagaacgttggctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gtgtggcatggcagaaagaactgtgacaaaatccagactatacagccagaacgttggctc 358
Query: 181 atacagacatgactctgttgattttacatatgaatctctgctattgttataatagtgtta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 357 atacagacatgactctgttgattttacatatgaatctctgctattgttataata-tgtta 299
Query: 241 gtatattctccttgctatcatattgggaatgattgctattgttcctaaaccatctaccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gtatattctccttgctatcatattgggaatgattgctattgttcctaaaccatctaccac 239
Query: 301 cgggctagatgtatttatatctcatgatgatcctgagg 338
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cgggctagatgtatttatatctcatgatgatcctgagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 737
Length adjustment: 9
Effective length of query: 329
Effective length of database: 728
Effective search space: 239512
Effective search space used: 239512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_l04.g1 MSMg01no280_l04.g1 CHROMAT_FILE:
MSMg01no280_l04.g1 PHD_FILE: MSMg01no280_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:36 2005
(326 letters)
>mm_chr4_31189482_31190207
Length = 726
Score = 615 bits (318), Expect = e-180
Identities = 324/326 (99%)
Strand = Plus / Plus
Query: 1 tatttcatgtcacaataataatatcaaactatgcatccatcgatggataaacccactaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttcatgtcacaataataatatcaaactatgcatccatcgatggataaacccactaat 260
Query: 61 tatgtcctgacctttgtgatccaattatcacttactaaatggaccaagcctttattcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtcctgacctttgtgatccaattatcacttactaaatggaccaagcctttattcaac 320
Query: 121 atttggggaatttgaggaacaggttaccctcaaattaaacagcggacttaaccacaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttggggaatttgaggaacaggttaccctcaaattaaacagcggacttaaccacaatct 380
Query: 181 ccaatatttctaaacttcccatgtatcttttctttctttgtatgcagttttgaataatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaatatttctaaacttcccatgtatcttttctttctttgtatgcagttttgaataatag 440
Query: 241 tggttattatctagaggtgcagctagtaactaactgtgtactgatgaaagaatgtgccct 300
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 441 tggttattatctagaggtgcagctagtaactaactgcgtgctgatgaaagaatgtgccct 500
Query: 301 tatttcaaggtgtaaggtacaggacc 326
||||||||||||||||||||||||||
Sbjct: 501 tatttcaaggtgtaaggtacaggacc 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space: 227289
Effective search space used: 227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
