BAC Information

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BAC

Clone NameMSMg01-288D17
Chromosome4 (Build37)
Map Location 47,911,925 - 48,092,350
singlet/doubletdoublet
Overlap geneLOC100040788, Nr4a3
Upstream geneGabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
Downstream geneStx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288D17.T7 (MSMg01no288_d17.b1)MSMg01-288D17.TJ (MSMg01no288_d17.g1)
ACCAG418114AG418115
length752748
length of high quality
(start - end)		366 (387 - 752)308 (441 - 748)
definitionCHROMAT_FILE: MSMg01no288_d17.b1 PHD_FILE: MSMg01no288_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:16 2005CHROMAT_FILE: MSMg01no288_d17.g1 PHD_FILE: MSMg01no288_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,911,925 - 47,912,289)(48,092,043 - 48,092,350)
sequence
ACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGAATCCG
CGGAATTCATGTCAAATTTATCCAACATACCAGAGGCTTACTCGACTTTT
TTTATTCTATCTTTTGTTTGCTTCTATTGCCAGCATAAAGAGTGATTATA
TATAAAGTAAGCCTATTTTCTATCAAAAATCATACTATTGCTCTCTTTAA
AATGTCTTGGAAAATGGCAAGGAGTGTTCTACCATCCCAATGAATCAAGG
ATACAGATAGAACTGTGAGCCATAGTTTATCAGATGAGAAACTAAGACAC
AGCAAGGCTGTACAACTCGTCCCAAGCACTTATCTATTTAGATAGCAGAC
CCAGGATTTAAGTTCTTTGTCTCTATTGACCTAACCCCTTAACCATAACA
GCTCTGTCGGGCCTTCAGAGACAAGCACGCTATTTCAAGAGACTGAACCA
AGACAGTAGATGGAGGATGAAAAAGGGCCATCCTTGTACTCTCTGAGGGG
TGTTACAAAGTAAAGACCATCACTTCCATAGCAACAGCACGTGGTAAAAA
TGAACTCACATTACCGTACAACAGGACAAGACAGAAATCTTGTCAGAGCA
CCGATAACTTTCAAAGATGGGATATTAAGCAAAAGTATTTTTAGGTTCTG
AAGAGTCGTAGTTTCTGGGTGGCTACTGGATGGGAAGCTAAGCAGTGTTC
TGAGCCAGTCACAAAATCTGAAGTCTGCAGTTCTGGATCCTTGGCCTGAT
CN

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTGAGGAATTCATAGACACTCCTGT
TAGGAGCCAAAGGCACCTCATGCTGCCTTTGTTGTTGTGAACACTCACAG
GATCTGTGGCTTCTTTAGTTTTCCATAGGAGCTAAGATAAAATTCAGTCT
CTGTGTATACTCCTGCCAGCAGCCAGCAAGGTTTTCAGTTCACCAGGGAG
TCACCAACTGTCTGGGACCTTCTCAGCAATTTAAAATTCCTTAAAATTCT
AATCACTGACATTTAGTTAAAGGGAACTTCCCCCACCCCTTGCAGATTAG
CAAACAGCTACAGAGTTTTTTTGTGCACCCCACCCCACAGAGGGAGAGAG
GGAGTCAGATATTTTCTCATTTCACAGAGATTTATACATGGAGGATTAAC
ATTTCTCTGGGCAGGAGGGGTGTAGCTTAGTGGTGGAGTGCTCGCTTAGC
ACACACGCCCTGGGTTGAATCCTCGTCAGCAACAGCAACCAAAAAAATTG
TTGTCACCCCCTCCAATGATTTAACCAAACGAGCTTTATACACTGGGTTT
ATACAATCCTGCATTTCAGGGTTATGTTTCCAAGATGTCAAGACAGAACT
CTTAGAGTCGTGGCTAAGTACTAGACATACATCAAAAACACTGTGCATGT
ACATGAGAAGAGATTTTATCTGCTTTGTTTAAACTCCCACCTAAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_d17.b1 MSMg01no288_d17.b1 CHROMAT_FILE:
MSMg01no288_d17.b1 PHD_FILE: MSMg01no288_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:16 2005
         (366 letters)



>mm_chr4_47911725_47912490
          Length = 766

 Score =  675 bits (349), Expect = 0.0
 Identities = 361/365 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttaaccataacagctctgtcgggccttcagagacaagcacgctatttcaagagactga 60
           ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||
Sbjct: 201 ccttaaccataacagctctgtcgggacttcagagacaagcagggtatttcaagagtctga 260

                                                                       
Query: 61  accaagacagtagatggaggatgaaaaagggccatccttgtactctctgaggggtgttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaagacagtagatggaggatgaaaaagggccatccttgtactctctgaggggtgttac 320

                                                                       
Query: 121 aaagtaaagaccatcacttccatagcaacagcacgtggtaaaaatgaactcacattaccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagtaaagaccatcacttccatagcaacagcacgtggtaaaaatgaactcacattaccg 380

                                                                       
Query: 181 tacaacaggacaagacagaaatcttgtcagagcaccgataactttcaaagatgggatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaacaggacaagacagaaatcttgtcagagcaccgataactttcaaagatgggatatt 440

                                                                       
Query: 241 aagcaaaagtatttttaggttctgaagagtcgtagtttctgggtggctactggatgggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcaaaagtatttttaggttctgaagagtcgtagtttctgggtggctactggatgggaa 500

                                                                       
Query: 301 gctaagcagtgttctgagccagtcacaaaatctgaagtctgcagttctggatccttggcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctaagcagtgttctgagccagtcacaaaatctgaagtctgcagttctggatccttggcc 560

                
Query: 361 tgatc 365
           |||||
Sbjct: 561 tgatc 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no288_d17.g1 MSMg01no288_d17.g1 CHROMAT_FILE:
MSMg01no288_d17.g1 PHD_FILE: MSMg01no288_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:16 2005
         (308 letters)



>mm_chr4_48091738_48092445
          Length = 708

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggattaacatttctctgggcaggaggggtgtagcttagtggtggagtgctcgcttagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gaggattaacatttctctgggcaggaggggtgtagcttagtggtggagtgctcgcttagc 554

                                                                       
Query: 61  acacacgccctgggttgaatcctcgtcagcaacagcaaccaaaaaaattgttgtcacccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 acacacgccctgggttgaatcctcgtcagcaacagcaaccaaaaaaattgttgtcacccc 494

                                                                       
Query: 121 ctccaatgatttaaccaaacgagctttatacactgggtttatacaatcctgcatttcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctccaatgatttaaccaaacgagctttatacactgggtttatacaatcctgcatttcagg 434

                                                                       
Query: 181 gttatgtttccaagatgtcaagacagaactcttagagtcgtggctaagtactagacatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gttatgtttccaagatgtcaagacagaactcttagagtcgtggctaagtactagacatac 374

                                                                       
Query: 241 atcaaaaacactgtgcatgtacatgagaagagattttatctgctttgtttaaactcccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atcaaaaacactgtgcatgtacatgagaagagattttatctgctttgtttaaactcccac 314

                   
Query: 301 ctaagaga 308
           ||||||||
Sbjct: 313 ctaagaga 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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