BAC Information

Click to search

BAC

Clone NameMSMg01-288J02
Chromosome4 (Build37)
Map Location 85,014,588 - 85,015,235
singlet/doubletsinglet
Overlap geneSh3gl2
Upstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303
Downstream geneA930009N24, LOC668052, Adamtsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288J02.T7 (MSMg01no288_j02.b1)MSMg01-288J02.TJ (MSMg01no288_j02.g1)
ACCAG418360AG418361
length752748
length of high quality
(start - end)
657 (72 - 728)650 (77 - 726)
definitionCHROMAT_FILE: MSMg01no288_j02.b1 PHD_FILE: MSMg01no288_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:40 2005CHROMAT_FILE: MSMg01no288_j02.g1 PHD_FILE: MSMg01no288_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATGAGAGGATTCCCCTAAAAAAAAAAAAAAAGTGAACACACATG
ATATGCACTCACTGATAAGTGGATATTACCCCAGAAACTTAGACTACCCA
AGATACAATTTGCAAAATACATGAAACTCAAGAAGGAAGACCAAAGTGTG
GGTACTTCATTTCTTCTTAGAATGGGGAACAAAATACCCATGAAACGAGT
TACAGAGACAAAGTTCAGAGCTGAGATGGAAGGAAGGACCATCCAGAGAC
TACCCCACCCTGGGATCCATCCCATAATCGGCCACCAAACCCAGACACTA
TTGCATATGCCAGCAAGATTTTGCTGACAGGACACTGACATAGCTGTCTG
TCTCTTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCA
CAGTCATCTATTGGATGGGACACAGGACCTCCGATGGAGGAGCTAGAGAA
AGTACCCAAAGGAGCTGGGGGAATCTGCAACCCCATAGGTGGAACAAAAA
TATGAACTAACCAGTACCCCCAGAGCTCATGTCTCTAGCTGCATATGTAG
CAAAGGATGGCCTAGATGGCCATCAATGGGAAGAGAGGCCCTTGGTCTTG
CAAAGATCATATGCCCCAGTACAGGGGAATGCCAGGTCCAGGAAGCAGGA
GTGGGTGGGTTGAGGAGCAGGGTGGGGGAGGGTATAGGGGACTTTGGGAT
AN
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTATAGGCATTTTGTCTTTTCT
TAATTCCTCTTTCTTGATCTCCTTTCTACCCCTTCTACTATACCCACACA
TACATGTCTTTAGTTATATAGATGTATATGTTTTAGGCTTGGACCCATAT
ATGAGGGACAACATGCTTTTTTTTTTCCTGTGAGATTGAGTGACCTCAAT
TTTTATTTTATGTTCTAGGTATATCCATTTTCCCAAAAGTTTTGTGATTT
AATTTTTCTATAGAGCTAAGTAGTATTCTGTTTTATATTACGCACTAGGT
TTTCATTATTCACTCATCTGTCAACAAACAATTGAGATGTTTCCAATTCT
TATCTACAGTGAATAGAGCAGCAAAAGGCATGGGGCACATGCATTTCTCA
AGTATGCTGTGGAGTTCTTTGGGTGTATGCACAGGTGTGACACAGCTGGC
TTGTACAGTAGTTCCAGTTTAAATATTTTGAGTAACTGCTGAATTGATTT
TTTTGTGTGGCTTTTCAGCAAAACTAACTAGTACATCTGTGTATATCTGT
GTTGTCCATGGACACATTTCTGGTGGAACAATGTGAAGAGGTGGAATCAT
AGAACATCAGTGTTCAGACGTAATAAATATTGCCTATTGGTATCCAAATT
CGTCCTACCCCCAGAGCAATACATGAGAGTTCTGGTTGCCCACCCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_j02.g1 MSMg01no288_j02.g1 CHROMAT_FILE:
MSMg01no288_j02.g1 PHD_FILE: MSMg01no288_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:41 2005
         (650 letters)



>mm_chr4_85014388_85015437
          Length = 1050

 Score = 1164 bits (602), Expect = 0.0
 Identities = 638/650 (98%), Gaps = 2/650 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttataggcattttgtcttttcttaattcctctttcttgatctcctttctaccccttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 201 acttataggcattttgtcttttcttaattcctctttcttgatctcctttctaaaccttct 260

                                                                       
Query: 61  actatacccacacatacatgtctttagttatatagatgtatatgttttaggcttggaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actatacccacacatacatgtctttagttatatagatgtatatgttttaggcttggaccc 320

                                                                       
Query: 121 atatatgagggacaacatgcttttttttttcctgtgagattgagtgacctcaatttttat 180
           ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 atatatgagtgacaacatgcttttttttt-cctgtgagattgagtgacctcaatttttat 379

                                                                       
Query: 181 tttatgttctaggtatatccattttcccaaaagttttgtgatttaatttttctatagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttatgttctaggtatatccattttcccaaaagttttgtgatttaatttttctatagagc 439

                                                                       
Query: 241 taagtagtattctgttttatattacgcactaggttttcattattcactcatctgtcaaca 300
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 taagtagtattctgctttatattatgcactaggttttcattattcactcatctgtcaaca 499

                                                                       
Query: 301 aacaattgagatgtttccaattcttatctacagtgaatagagcagcaaaaggcatggggc 360
           |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 500 aacaattgggatgtttccaattcttatctatagtgaatagagcagcaaaaggcatggggc 559

                                                                       
Query: 361 acatgcatttctcaagtatgctgtggagttctttgggtgtatgcacaggtgtgacacagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acatgcatttctcaagtatgctgtggagttctttgggtgtatgcacaggtgtgacacagc 619

                                                                       
Query: 421 tggcttgtacagtagttccagtttaaatattttgagtaactgctgaattgatttttttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 620 tggcttgtacagtagttccagtttaaatattttgagtaactgctgaattgatttttt-gt 678

                                                                       
Query: 481 gtggcttttcagcaaaactaactagtacatctgtgtatatctgtgttgtccatggacaca 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtggcttttcagtaaaactaactagtacatctgtgtatatctgtgttgtccatggacaca 738

                                                                       
Query: 541 tttctggtggaacaatgtgaagaggtggaatcatagaacatcagtgttcagacgtaataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tttctggtggaacaatgtgaagaggtggaatcatagaacatcagtgttcagacgtaataa 798

                                                             
Query: 601 atattgcctattggtatccaaattcgtcctacccccagagcaatacatga 650
           |||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 799 atattgcctattagtatccaaattcgtcctaccctcagagcaatacatga 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)