BAC Information

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BAC

Clone NameMSMg01-288L10
Chromosome4 (Build37)
Map Location 153,892,650 - 153,892,944
singlet/doubletsinglet
Overlap genePrdm16
Upstream geneBC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16
Downstream geneLOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288L10.T7 (MSMg01no288_l10.b1)MSMg01-288L10.TJ (MSMg01no288_l10.g1)
ACCAG418464AG418465
length756759
length of high quality
(start - end)
---294 (72 - 365)
definitionCHROMAT_FILE: MSMg01no288_l10.b1 PHD_FILE: MSMg01no288_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:51 2005CHROMAT_FILE: MSMg01no288_l10.g1 PHD_FILE: MSMg01no288_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXX
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCAGACAACAGGGAGAGCCATCACTTTC
CTGAAATGAGGGTGAGGATTCTACCGCAGCCTCCAGGATGCCCGTGGCAA
AGTTGGAACACTGCAGGGCACAGGGGTGTATTCAGGCAAGTCCTTGTGGG
GCTCTGGTCCTGACAGCCAGTAACATGCAGTGTGCAGACCTCCCTGTCCC
ACAGTCTTGGAGTTTCTGAAGCAGTCTTTATAGAGATTGCCTGATAACCT
CCCCATCCAGAGCGCTTCTGGGATGCCCGTTGTAGAAGCATCTCTGTCCA
CGGGGCTAGGATGCCTTTTTATGTCCTGCCCACCTGTGAATCAACAGCAG
CTGAGGAGCGGGCACATCCCCCCCCTGGGCTATATCTGGACTGACCCAGA
AAGCAACCAGACCCCCACGGCTGCAGAAACTGTACCATCAGTCATCTACA
CTGATTTCCCAGCCGTGATTCATACGGAGCAGGATGAGCCAGGAAGAGGG
CGCTCCCTGGGCATCTCCCTAGGGAGAGCCCAAGCCACCATGCTGATATC
TGTCCCTTGTGAGCCCTCCCTGTCTGCTGTGCATGGTGCCAGACAAGAGC
CCAGGCTGTCCAGGCCATATAAGGTCTCCCTGGGCCCGGGTTGAGATGGC
AGCTCGGGTTCTCCCCTCCGCACGTACATTACTACCCTCGCTGCTTTACC
GATGTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_l10.g1 MSMg01no288_l10.g1 CHROMAT_FILE:
MSMg01no288_l10.g1 PHD_FILE: MSMg01no288_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:51 2005
         (294 letters)



>mm_chr4_153892450_153893144
          Length = 695

 Score =  532 bits (275), Expect = e-155
 Identities = 290/295 (98%), Gaps = 1/295 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagacaacagggagagccatcactttcctgaaatgagggtgaggattctaccgcagcc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 495 ttcagacaacagggagagccatcactttcctgaaatgagggtgagggttctacagcagcc 436

                                                                       
Query: 61  tccaggatgcccgtggcaaagttggaacactgcagggcacaggggtgtattcaggcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 435 tccaggatgcccgtggcaaagttggaacactgcagggcacaggggtgtactcaggcaagt 376

                                                                       
Query: 121 ccttgtggggctctggtcctgacagccagtaacatgcagtgtgcagacctccctgtccca 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccttgtggggctctggccctgacagccagtaacatgcagtgtgcagacctccctgtccca 316

                                                                       
Query: 181 cagtcttggagtttctgaagcagtctttatagag-attgcctgataacctccccatccag 239
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 315 cagtcttggagtttctgaagcagtctttatagagaattgcctgataacctccccatccag 256

                                                                  
Query: 240 agcgcttctgggatgcccgttgtagaagcatctctgtccacggggctaggatgcc 294
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agcgcttctgggatgcccgttgtagaagcatctctgtccacggggctaggatgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 695
Length adjustment: 9
Effective length of query: 285
Effective length of database: 686
Effective search space:   195510
Effective search space used:   195510
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)