Query= MSMg01no288_m23.b1 MSMg01no288_m23.b1 CHROMAT_FILE:
MSMg01no288_m23.b1 PHD_FILE: MSMg01no288_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:58 2005
(667 letters)
>mm_chr4_58960099_58961161
Length = 1063
Score = 1058 bits (547), Expect = 0.0
Identities = 607/635 (95%), Gaps = 16/635 (2%)
Strand = Plus / Minus
Query: 5 gaattccttcctttgatacatctttagctatatagcactctgtacaatagagtttaggaa 64
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 826 gaattccttcctttgatatatctttagctatatagcactctgtataatagagtttagg-- 769
Query: 65 aaaaaaatt---------ggggggggcgtttcgagacagggtttctctgtatagccctgg 115
||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 768 aaaaaaattttttttttgggggggggggtttcgagacagggtttctctgtatagccctgg 709
Query: 116 ctgtcctggaactcactttgtagatcaggctggcctcgaactcagaaatccacctgcttc 175
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 708 ctgtcctggaactcactttgtagatcaggctggccttgaacttagaaatccacctgcttc 649
Query: 176 tgcctcccgagtgctgggattaaaggcgtgcaccaccatacccggctaatatttttaatt 235
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 648 tgcctcccgagtgctgggattaaaggcgtgcaccaccacacccggctaatatttttaatt 589
Query: 236 tataagatctaccaaggtaaaccagctttgctcaaatattatttatagctgttgactgaa 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tataagatctaccaaggtaaaccagctttgctcaaatattatttatagctgttgactgaa 529
Query: 296 tactatgctaaccccccccccaaaaaaaaacaaaaaacaaaaaaacaaatgtgcctctgg 355
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 528 tactatgataacccccccc----aaaaaaacaaaaaacaaaaaaacaaatgtgcctctgg 473
Query: 356 gatttctagctgatttctaccgacaatagctaagaagcaagaggacttcaggggctggag 415
|||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 472 gattgctagctgatttctacagataatagctaagaagcaagaggacttcaggggctggag 413
Query: 416 agatggctctgtagttaagagcactgactgctcttccagagatcctgagttcaattccca 475
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 agatggctctgaagttaagagcactgactgctcttccagagatcctgagttcaattccca 353
Query: 476 gcaaccacatggtggctcacaaccatccataaggagatctgatgtcctcttctagggtgt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gcaaccacatggtggctcacaaccatccataaggagatctgatgtcctcttctagggtgt 293
Query: 536 ctgaggacagctccagtgtacttacatataataaataaataaaacttttctttaaaagag 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 292 ctgaggacagctccagtgtacttacatataataaataaataaaacttttctttaaaa-ag 234
Query: 596 agagagagagagagagagagagagagagagagaga 630
||||||||||||||||||| |||||||||||||||
Sbjct: 233 agagagagagagagagagaaagagagagagagaga 199
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1063
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1053
Effective search space: 691821
Effective search space used: 691821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_m23.g1 MSMg01no288_m23.g1 CHROMAT_FILE:
MSMg01no288_m23.g1 PHD_FILE: MSMg01no288_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:59 2005
(457 letters)
>mm_chr4_58792543_58793401
Length = 859
Score = 853 bits (441), Expect = 0.0
Identities = 451/455 (99%), Gaps = 2/455 (0%)
Strand = Plus / Plus
Query: 1 cctgtgccagtaaatgtgccagtaaccttctgttctacaaaccaggaaactagaaattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgtgccagtaaatgtgccagtaaccttctgttctacaaaccaggaaactagaaattct 260
Query: 61 ttgataccttcacttactacctctgtcttatacacattaattcttatgatattaatatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgataccttcacttactacctctgtcttatacacattaattcttatgatattaatatta 320
Query: 121 tttttcaaatagcttttaaatccatctactatctttttttt--catagccaccacaatat 178
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 tttttcaaatagctttcaaatccatctactatcttttttttttcatagccaccacaatat 380
Query: 179 ttcaaattcccagcaacactaagtagctcattataaatctgccctacatgcttttacttt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaaattcccagcaacactaagtagctcattataaatctgccctacatgcttttacttt 440
Query: 239 gtgtcaagtcccaatttccttgaattcattctctatgttgtaaccagaagaatttctatc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtcaagtcccaatttccttgaattcattctctatgttgtaaccagaagaatttctatc 500
Query: 299 aagaaaatgcctgtaaacacctgctcaaacaaagtcaatggctgttacgcatacatattc 358
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 aagaaaatgcctgtaaacacctgctcaaacaaagtcaatggctgttaggcatacatattc 560
Query: 359 tctgatcctttggccttcttttggctccacacacaaagattcttgacttctgatagagga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgatcctttggccttcttttggctccacacacaaagattcttgacttctgatagagga 620
Query: 419 gaggagaggagaggagaggagaggagaggagagga 453
|||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggagaggagaggagaggagaggagaggagagga 655
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 859
Length adjustment: 10
Effective length of query: 447
Effective length of database: 849
Effective search space: 379503
Effective search space used: 379503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
