BAC Information

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BAC

Clone NameMSMg01-288P12
Chromosome4 (Build37)
Map Location 133,535,547 - 133,684,053
singlet/doubletdoublet
Overlap geneDhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3
Upstream geneFgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2
Downstream geneCcdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288P12.T7 (MSMg01no288_p12.b1)MSMg01-288P12.TJ (MSMg01no288_p12.g1)
ACCAG418650AG418651
length753755
length of high quality
(start - end)		214 (439 - 652)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no288_p12.b1 PHD_FILE: MSMg01no288_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:11 2005CHROMAT_FILE: MSMg01no288_p12.g1 PHD_FILE: MSMg01no288_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,535,547 - 133,535,760)(133,683,766 - 133,684,053)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCGCAGCTGGGCGG
AATTCTACTGTCTTTCAACATAAGGTCTCAAATTCACTGGCTTTGCCGGG
CAGTGGTGGAAGACGCCTATAACCCCAGCACTTGGGAGGCAGAGGCAGGC
AGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTTCCAGGACAGCCA
GGGCTACACAGAGAAACCCTGTCTCCAACCCCCCCCCTCAAAAAAAAACA
AAAACTAAAACAAAAACAAAAACCTCACTGGCTTTGATTTTGAGATCCTC
CTGGCCCAGCTTCCCAATGGCTTATTCNATCAGTGGGTGTGGACAGCTGT
GACTTTGATCAGGTTTCTTTGAGCTTCCTCCCGCGCCTTCAGGACACCTT
ATCCTTATATTAGTTCCTAAACAGTGTCTCTTTCTCTGGCCTTAAGCTCA
TCCGCCTGTGTCTTGTCTTGAGTACTAGGATTAAAAGCATCAGCACCATG
TCCCAGGTATCTCTGTCCCTCATTTACAGAGAGACTAGCAAGACCTACCT
GAGTGCTTAGGAGCACAAATGAGGAACTGTGGAACACGTTCAGTGTCTGA
CAGTAATTGATCAGTGTGTGGTAGTAGTATTATAATGACCATCATTGTCA
AGAAATGTTTGTGGTCTGGAAAGATGGCTCAGTGCGTAAAGGCACTTGTC
ACCAAGCCTGACAGCCTGAGTTCAATTCCTGAGACCCACAGGAAGGAGAG
AAC

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCACAAATCCTTCAGCTTGCC
TGCCAACCCTGTCAATCCTCCGCCCCTAGATCAAGTCCCAGCAGAGTGAG
GTGACCCGCATCCTAGATGGGAAGAGGATCCAATACCAGCTAGTGGACAT
CTCCCAGGACAACGCCCTTCGAGATGAGATGCGAACCTTGGCTGGCAACC
CCAAAGCTACCCCACCTCAGATTGTCAACGGGAACCACTACTGTGGGGTA
TGGGGTTTGGGTTCTGGGAGGTGTTGTAGGACTGCAGCCAGGGTCAGACC
TGGGCAAACAACTGTTTTTTTTTGCACCTCCCCCCCCGTGACTGCCTCCC
TTCCTCAGGACTATGAACTCCTCCCGGAGAAAAAAAAACAAGACGCCGTG
CGGGAGTTCCTGAAGCTGGCCTGAGTCAGGATGGCCACCGATCCTATCCA
GCTAGCTCTTCACCAGGTCTTGTAACCAACTCCTTGGCGTCCTAATCTGC
AAACCCAGACCCAGACCCTTTCCGCAGCCGCCTCCTCTTCCTCCAGAGGT
ATAATTCCTTATTCACCAACTATTCTCAAAAGATTGTCTTAAGCCCTGAC
GATGGCTGTCCCCTGTTCCTTTTTGGGGCCTCTTCTCTGCCTGGCCCTGC
TTGATGACAATTTCCGTTGTTTCCATTCAGCCACACTCTGTTTAAAGGTC
TCGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_p12.b1 MSMg01no288_p12.b1 CHROMAT_FILE:
MSMg01no288_p12.b1 PHD_FILE: MSMg01no288_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:11 2005
         (214 letters)



>mm_chr4_133535347_133535960
          Length = 614

 Score =  414 bits (214), Expect = e-120
 Identities = 214/214 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccttaagctcatccgcctgtgtcttgtcttgagtactaggattaaaagcatcagcacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccttaagctcatccgcctgtgtcttgtcttgagtactaggattaaaagcatcagcacca 260

                                                                       
Query: 61  tgtcccaggtatctctgtccctcatttacagagagactagcaagacctacctgagtgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcccaggtatctctgtccctcatttacagagagactagcaagacctacctgagtgctt 320

                                                                       
Query: 121 aggagcacaaatgaggaactgtggaacacgttcagtgtctgacagtaattgatcagtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagcacaaatgaggaactgtggaacacgttcagtgtctgacagtaattgatcagtgtg 380

                                             
Query: 181 tggtagtagtattataatgaccatcattgtcaag 214
           ||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtagtagtattataatgaccatcattgtcaag 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no288_p12.g1 MSMg01no288_p12.g1 CHROMAT_FILE:
MSMg01no288_p12.g1 PHD_FILE: MSMg01no288_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:11 2005
         (288 letters)



>mm_chr4_133683566_133684253
          Length = 688

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcccacaaatccttcagcttgcctgccaaccctgtcaatcctccgcccctagatcaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ctcccacaaatccttcagcttgcctgccaaccctgtcaatcctccgcccctagatcaagt 429

                                                                       
Query: 61  cccagcagagtgaggtgacccgcatcctagatgggaagaggatccaataccagctagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cccagcagagtgaggtgacccgcatcctagatgggaagaggatccaataccagctagtgg 369

                                                                       
Query: 121 acatctcccaggacaacgcccttcgagatgagatgcgaaccttggctggcaaccccaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 acatctcccaggacaacgcccttcgagatgagatgcgaaccttggctggcaaccccaaag 309

                                                                       
Query: 181 ctaccccacctcagattgtcaacgggaaccactactgtggggtatggggtttgggttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctaccccacctcagattgtcaacgggaaccactactgtggggtatggggtttgggttctg 249

                                                           
Query: 241 ggaggtgttgtaggactgcagccagggtcagacctgggcaaacaactg 288
           |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggaggtgttggaggactgcagccagggtcagacctgggcaaacaactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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